Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS70_RS28775 Genome accession   NZ_CP107945
Coordinates   6512790..6513446 (-) Length   218 a.a.
NCBI ID   WP_328402085.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00390     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6507790..6518446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS70_RS28755 (OHS70_28800) - 6508458..6509864 (+) 1407 WP_328402077.1 NCS2 family permease -
  OHS70_RS28760 (OHS70_28805) - 6509941..6510684 (-) 744 WP_328402079.1 hypothetical protein -
  OHS70_RS28765 (OHS70_28810) - 6510733..6511185 (-) 453 WP_328402081.1 hypothetical protein -
  OHS70_RS28770 (OHS70_28815) - 6511240..6512688 (-) 1449 WP_328402083.1 penicillin-binding transpeptidase domain-containing protein -
  OHS70_RS28775 (OHS70_28820) vraR 6512790..6513446 (-) 657 WP_328402085.1 response regulator transcription factor Regulator
  OHS70_RS28780 (OHS70_28825) - 6513443..6514681 (-) 1239 WP_328402087.1 histidine kinase -
  OHS70_RS28785 (OHS70_28830) - 6514705..6515694 (-) 990 WP_328402089.1 hypothetical protein -
  OHS70_RS28790 (OHS70_28835) - 6515784..6516254 (-) 471 WP_328405964.1 GNAT family N-acetyltransferase -
  OHS70_RS28795 (OHS70_28840) - 6516269..6517039 (-) 771 WP_328402091.1 IclR family transcriptional regulator -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23415.98 Da        Isoelectric Point: 4.9902

>NTDB_id=649889 OHS70_RS28775 WP_328402085.1 6512790..6513446(-) (vraR) [Streptomyces sp. NBC_00390]
MSAIRVVLADDERMVRTALRVILDAEPDLEVVGEAATGAEAVSVVRELRPDVVLMDVRMPEIDGIRASEQILGTLAEPPR
IVVVTTFENDAYVYEALRAGAAGFLLKRAAVEELVQAVRLVARSDSLLFPAAVRSLAAEYGRREPAPAPAWAARLTEREA
QVLRLMATGLTNAEIADRMGVGPATTKTHVASVLAKTGARDRTQAVIAAYETGFISPR

Nucleotide


Download         Length: 657 bp        

>NTDB_id=649889 OHS70_RS28775 WP_328402085.1 6512790..6513446(-) (vraR) [Streptomyces sp. NBC_00390]
ATGAGCGCGATCCGGGTGGTGCTCGCCGACGACGAGCGCATGGTCCGTACGGCGCTGCGCGTCATCCTCGACGCCGAGCC
CGACCTCGAGGTCGTCGGCGAGGCGGCGACGGGCGCGGAGGCGGTGTCGGTGGTGCGCGAGCTGCGCCCGGACGTGGTCC
TCATGGATGTGCGGATGCCGGAGATCGACGGCATCCGGGCGAGTGAGCAGATACTGGGCACGCTGGCGGAGCCTCCGCGG
ATCGTGGTGGTGACGACCTTCGAGAACGACGCGTACGTGTACGAGGCGCTGCGCGCCGGAGCGGCCGGGTTCCTGCTCAA
GCGGGCCGCCGTGGAGGAACTGGTGCAGGCGGTCCGGCTGGTCGCGCGCAGTGACTCGCTGCTCTTCCCCGCGGCCGTGC
GCTCGCTTGCCGCCGAGTACGGCCGCCGCGAGCCCGCCCCGGCCCCTGCGTGGGCCGCGCGGCTGACCGAGCGGGAGGCA
CAGGTGCTGCGGCTGATGGCGACCGGCCTGACGAACGCGGAGATCGCCGACCGGATGGGGGTGGGTCCCGCGACCACCAA
GACGCATGTGGCATCGGTGCTGGCGAAGACGGGCGCCCGGGACCGTACACAGGCGGTGATCGCGGCGTACGAGACGGGGT
TCATCTCGCCCCGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.264

97.248

0.362