Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHS70_RS12325 Genome accession   NZ_CP107945
Coordinates   2947488..2947697 (+) Length   69 a.a.
NCBI ID   WP_328405580.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00390     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2942488..2952697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS70_RS12285 (OHS70_12305) - 2943172..2943456 (-) 285 WP_328396688.1 DUF6303 family protein -
  OHS70_RS12290 (OHS70_12310) - 2943456..2943719 (-) 264 WP_328396690.1 DUF6284 family protein -
  OHS70_RS12295 (OHS70_12315) - 2944372..2945130 (+) 759 WP_328396692.1 helix-turn-helix domain-containing protein -
  OHS70_RS12300 (OHS70_12320) - 2945133..2945606 (+) 474 WP_328396694.1 NUDIX domain-containing protein -
  OHS70_RS12305 (OHS70_12325) - 2945594..2946166 (-) 573 WP_328396696.1 HD domain-containing protein -
  OHS70_RS12310 (OHS70_12330) - 2946163..2946630 (-) 468 WP_328396698.1 GntR family transcriptional regulator -
  OHS70_RS12315 (OHS70_12335) - 2946898..2947143 (+) 246 WP_328396700.1 hypothetical protein -
  OHS70_RS12320 (OHS70_12340) - 2947197..2947394 (-) 198 WP_328396702.1 hypothetical protein -
  OHS70_RS12325 (OHS70_12345) dinR/lexA 2947488..2947697 (+) 210 WP_328405580.1 MarR family transcriptional regulator Regulator
  OHS70_RS12330 (OHS70_12350) - 2947711..2948040 (+) 330 WP_328396704.1 DUF6233 domain-containing protein -
  OHS70_RS12335 (OHS70_12355) csb2 2950446..2951942 (-) 1497 WP_328396706.1 type I-U CRISPR-associated protein Csb2 -

Sequence

Protein


Download         Length: 69 a.a.        Molecular weight: 7941.09 Da        Isoelectric Point: 11.4419

>NTDB_id=649848 OHS70_RS12325 WP_328405580.1 2947488..2947697(+) (dinR/lexA) [Streptomyces sp. NBC_00390]
MDRLTERQERILRCIREEIAATGEGPSIRQIGQLVGLSSSSSVAYQLGRLEERGLISRTGRRWRNCHMR

Nucleotide


Download         Length: 210 bp        

>NTDB_id=649848 OHS70_RS12325 WP_328405580.1 2947488..2947697(+) (dinR/lexA) [Streptomyces sp. NBC_00390]
ATGGATCGCCTGACCGAACGGCAGGAGCGCATCCTGCGGTGCATCCGCGAGGAGATCGCCGCCACTGGGGAAGGGCCGAG
CATCCGGCAGATCGGGCAGCTCGTCGGCCTGTCGTCGTCCTCGTCCGTCGCATACCAGCTCGGGCGACTCGAGGAGCGGG
GCCTGATCTCCCGCACCGGGCGCCGCTGGCGCAACTGTCACATGCGATAG

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

48.438

92.754

0.449