Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OHS70_RS10360 Genome accession   NZ_CP107945
Coordinates   2522755..2523978 (-) Length   407 a.a.
NCBI ID   WP_328395974.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00390     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2517755..2528978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS70_RS10340 (OHS70_10355) - 2518103..2518441 (-) 339 WP_328395966.1 P-II family nitrogen regulator -
  OHS70_RS10345 (OHS70_10360) - 2518438..2519793 (-) 1356 WP_328395968.1 ammonium transporter -
  OHS70_RS10350 (OHS70_10365) - 2520093..2521568 (-) 1476 WP_328395970.1 hypothetical protein -
  OHS70_RS10355 (OHS70_10370) - 2521999..2522661 (+) 663 WP_328395972.1 bifunctional DNA primase/polymerase -
  OHS70_RS10360 (OHS70_10375) pilA 2522755..2523978 (-) 1224 WP_328395974.1 signal recognition particle-docking protein FtsY Machinery gene
  OHS70_RS10365 (OHS70_10380) - 2524136..2525113 (+) 978 WP_328395976.1 LLM class flavin-dependent oxidoreductase -
  OHS70_RS10370 (OHS70_10385) - 2525147..2526568 (-) 1422 WP_328395978.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 42950.18 Da        Isoelectric Point: 4.4788

>NTDB_id=649841 OHS70_RS10360 WP_328395974.1 2522755..2523978(-) (pilA) [Streptomyces sp. NBC_00390]
MEIVILAVVIALVAVGAISGLVVSSRKKKQLPPRPPSSTPTITAPPAEPHVGDEAETPRDEPRRTIEEVDLPTAEEAVEA
PVALEDPVVAEPLAPAIEIPEPTAGRLVRLRARLARSQSSLGKGLLTLLSREHLDEETWEEIEDTLLTADVGVAPTQELV
ERLRERVKVLGTRTPVELRTLLREELLTLLGTDFDRSVRTESGVDTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVL
GAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK
HGPLDEILLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGPDDLAPFEAEAF
VDALIGD

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=649841 OHS70_RS10360 WP_328395974.1 2522755..2523978(-) (pilA) [Streptomyces sp. NBC_00390]
ATGGAAATCGTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGCCATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCGCCCCGGCCGCCGTCGAGCACGCCGACCATCACTGCTCCGCCCGCCGAACCGCACGTCGGTGACG
AGGCGGAGACACCGCGCGACGAACCCCGCCGCACCATCGAAGAGGTCGACCTCCCGACCGCCGAAGAGGCGGTCGAAGCC
CCGGTCGCCCTCGAGGACCCGGTCGTCGCAGAGCCCCTCGCCCCCGCGATCGAGATCCCGGAGCCGACCGCCGGACGGCT
GGTCCGGCTGCGTGCCCGGCTCGCCCGCTCGCAGAGCTCGCTCGGCAAGGGGCTGCTCACGCTCCTGTCCCGCGAGCACC
TCGACGAGGAGACGTGGGAGGAGATCGAGGACACGCTGCTCACCGCCGACGTCGGCGTCGCGCCGACCCAGGAGCTCGTC
GAGCGGCTGCGCGAGCGCGTGAAGGTCCTCGGCACCCGTACCCCGGTGGAGCTGCGCACCCTGCTGCGCGAAGAGCTGCT
CACGCTGCTCGGCACCGACTTCGACCGCTCCGTCAGGACCGAGAGCGGAGTCGACACTCCTGGCGTGGTCATGGTCGTCG
GCGTGAACGGCACCGGCAAGACCACCACGACCGGCAAGCTGGCCCGCGTCCTGGTCGCGGACGGCCGCTCCGTGGTGCTC
GGCGCTGCCGACACCTTCCGAGCCGCCGCCGCCGACCAGCTCCAGACCTGGGGTGAGCGGGTGGGCGCCCGCACCGTACG
CGGACCCGAGGGCGGCGACCCTGCCTCCATCGCGTTCGACGCGGTCAAGGAAGGCATCGCCGAGGGCGCCGATGTCGTGC
TCATCGACACCGCCGGCCGGCTGCACACCAAGACGGGCCTGATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTGGAGAAG
CACGGCCCGCTGGACGAGATCCTGCTGGTCCTGGACGCCACGACCGGTCAGAACGGTCTGGTGCAGGCCCGGGTGTTCGC
CGAGGTCGTGGACATCACCGGCATCGTGCTGACCAAACTGGACGGCACCGCCAAGGGCGGCATCGTCATCGCGGTCCAGC
GGGAGCTGGGCGTTCCGGTGAAGCTCGTCGGACTCGGCGAGGGCCCGGACGACCTGGCGCCCTTCGAGGCGGAGGCCTTC
GTCGACGCGCTGATCGGCGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(208-405)

SRP54-type protein, helical bundle domain (SRP54_N)

(121-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

39.952

100

0.405