Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHS70_RS09420 Genome accession   NZ_CP107945
Coordinates   2304695..2305480 (+) Length   261 a.a.
NCBI ID   WP_328395638.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00390     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2299695..2310480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS70_RS09405 (OHS70_09420) - 2299860..2300390 (+) 531 WP_328395632.1 TerD family protein -
  OHS70_RS09410 (OHS70_09425) - 2300530..2303421 (-) 2892 WP_328395634.1 vitamin B12-dependent ribonucleotide reductase -
  OHS70_RS09415 (OHS70_09430) nrdR 2303592..2304104 (-) 513 WP_328395636.1 transcriptional regulator NrdR -
  OHS70_RS09420 (OHS70_09435) dinR/lexA 2304695..2305480 (+) 786 WP_328395638.1 transcriptional repressor LexA Regulator
  OHS70_RS09425 (OHS70_09440) - 2305584..2307554 (-) 1971 WP_328395640.1 ATP-dependent DNA helicase -
  OHS70_RS09430 (OHS70_09445) - 2307607..2309472 (-) 1866 WP_328395642.1 IucA/IucC family siderophore biosynthesis protein -
  OHS70_RS09435 (OHS70_09450) - 2309532..2310275 (-) 744 WP_328395644.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28257.00 Da        Isoelectric Point: 8.0891

>NTDB_id=649836 OHS70_RS09420 WP_328395638.1 2304695..2305480(+) (dinR/lexA) [Streptomyces sp. NBC_00390]
MTTTADSATITAQDRSQNRFEPVHAMNDAATTPEGPKPTRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKRESGHVWLLPHNAAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=649836 OHS70_RS09420 WP_328395638.1 2304695..2305480(+) (dinR/lexA) [Streptomyces sp. NBC_00390]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAACCGATTCGAGCCGGTGCATGCCATGAA
TGACGCAGCCACGACCCCGGAGGGGCCCAAGCCCACCCGCTCGCTGCCCGGCCGACCTCCAGGGATCCGGGCGGACAGCT
CCGGCCTCACGGACCGGCAGCGGCGTGTCATCGAGGTGATCCGTGACTCCGTGCAGCGCCGGGGATACCCCCCGTCGATG
CGCGAGATCGGCCAGGCGGTCGGGCTGTCCAGCACGTCCTCCGTCGCGCATCAGCTCATGGCTCTGGAGCGAAAGGGCTT
CCTGCGCAGGGACCCGCACCGCCCCAGGGCGTACGAGGTCCGCGGCTCCGACCAGCCCAGCAGCCAGCCGACCGACACCA
CGGGCAAGCCCGCGGCCTCCTACGTGCCCCTCGTCGGCCGGATCGCGGCCGGCGGCCCGATCCTCGCCGAGGAGTCGGTA
GAGGACGTCTTCCCGCTGCCGCGGCAGCTGGTCGGTGACGGAGAGCTGTTCGTCCTGAAGGTCGTCGGCGACTCCATGAT
CGAAGCCGCCATCTGCGACGGTGACTGGGTGACCGTGCGCCGCCAGCCGGTCGCGGAGAACGGCGACATCGTGGCCGCCA
TGCTGGACGGCGAAGCCACGGTCAAGCGTTTCAAGCGGGAGAGCGGCCATGTGTGGCTGCTCCCTCACAACGCTGCGTAC
CAGCCCATCCCCGGTGACGAGGCGACGATCCTCGGCAAGGTGGTGGCGGTCCTGCGGCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(143-255)

LexA DNA binding domain (LexA_DNA_bind)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

81.226

0.375