Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG212_RS08445 Genome accession   NZ_CP107944
Coordinates   2005108..2005761 (+) Length   217 a.a.
NCBI ID   WP_328508109.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00391     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2000108..2010761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG212_RS08430 (OG212_08435) - 2001923..2002657 (+) 735 WP_328505723.1 Sir2 family NAD-dependent protein deacetylase -
  OG212_RS08435 (OG212_08440) - 2002712..2003518 (-) 807 WP_328505724.1 class I SAM-dependent methyltransferase -
  OG212_RS08440 (OG212_08445) - 2003759..2005024 (+) 1266 WP_326585553.1 sensor histidine kinase -
  OG212_RS08445 (OG212_08450) vraR 2005108..2005761 (+) 654 WP_328508109.1 response regulator transcription factor Regulator
  OG212_RS08450 (OG212_08455) - 2005814..2006305 (-) 492 WP_326574985.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  OG212_RS08455 (OG212_08460) - 2006376..2007860 (-) 1485 WP_328508110.1 AlkA N-terminal domain-containing protein -
  OG212_RS08460 (OG212_08465) - 2008041..2010005 (-) 1965 WP_328508111.1 heavy metal translocating P-type ATPase -
  OG212_RS08465 (OG212_08470) - 2010063..2010431 (+) 369 WP_326574986.1 metalloregulator ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 23002.44 Da        Isoelectric Point: 8.0889

>NTDB_id=649764 OG212_RS08445 WP_328508109.1 2005108..2005761(+) (vraR) [Streptomyces sp. NBC_00391]
MRLLLCDDHAVVRAGLRALLSSADGIEVVGEAGTGEEALALAARLRPDVVLMDLQLGDGVDGVTATRRLTSRPADARHSP
TAPPAPAPRVLVLTMFDTDADISRAIEAGATGYLLKAERPDELFAAIRDAAASRTALSAPVADRLLAQLRSPRPALSERE
HEILGQLARGLGNREIARALFISEATVKTHLGRIYGKLGVETRSGAVAVAKERRLLP

Nucleotide


Download         Length: 654 bp        

>NTDB_id=649764 OG212_RS08445 WP_328508109.1 2005108..2005761(+) (vraR) [Streptomyces sp. NBC_00391]
GTGCGGCTCCTGCTGTGCGACGACCACGCCGTCGTACGCGCCGGGCTGCGCGCGCTGCTGTCCAGTGCCGACGGCATCGA
GGTGGTCGGTGAGGCGGGCACCGGTGAGGAGGCGCTCGCCCTGGCCGCCCGCCTGCGCCCCGACGTCGTACTGATGGACC
TGCAACTCGGCGACGGCGTGGACGGCGTGACGGCCACCCGTCGGCTGACCTCACGGCCGGCCGACGCCCGGCACTCCCCC
ACCGCCCCGCCCGCTCCGGCCCCCCGCGTCCTCGTGCTCACCATGTTCGACACCGACGCCGACATCAGCCGTGCCATCGA
AGCGGGGGCCACCGGCTATCTCCTCAAGGCCGAGCGGCCCGACGAACTGTTCGCGGCGATCCGCGACGCCGCGGCCAGCC
GTACCGCGCTGTCGGCGCCGGTGGCCGACCGGCTGCTGGCCCAACTGCGCAGCCCACGGCCCGCGTTGTCCGAGCGCGAG
CACGAGATCCTCGGTCAGCTGGCCCGTGGCCTGGGCAACCGGGAGATAGCGCGAGCCCTCTTCATCAGCGAGGCGACCGT
CAAGACCCACCTCGGCCGCATCTACGGCAAGCTGGGCGTGGAGACCCGGTCGGGCGCGGTGGCCGTGGCGAAGGAGCGCC
GCCTGCTGCCGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-128)

Bacterial regulatory proteins, luxR family (GerE)

(155-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

35.909

100

0.364