Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG212_RS01585 Genome accession   NZ_CP107944
Coordinates   398770..399792 (-) Length   340 a.a.
NCBI ID   WP_326585470.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00391     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 393770..404792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG212_RS01570 (OG212_01570) - 394491..396251 (+) 1761 WP_327731866.1 dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein -
  OG212_RS01575 (OG212_01575) - 396248..397084 (+) 837 WP_328505255.1 ATP-binding cassette domain-containing protein -
  OG212_RS01580 (OG212_01580) - 397148..398668 (-) 1521 WP_326573425.1 glycoside hydrolase family 43 protein -
  OG212_RS01585 (OG212_01585) cytR 398770..399792 (-) 1023 WP_326585470.1 LacI family DNA-binding transcriptional regulator Regulator
  OG212_RS01590 (OG212_01590) - 400012..401751 (+) 1740 WP_328505256.1 cellulase family glycosylhydrolase -
  OG212_RS01595 (OG212_01595) - 402179..402478 (+) 300 WP_328505257.1 hypothetical protein -
  OG212_RS01600 (OG212_01600) - 402506..403204 (+) 699 WP_328505258.1 helix-turn-helix domain-containing protein -
  OG212_RS01605 (OG212_01605) - 403403..404047 (+) 645 WP_328508076.1 DNA alkylation repair protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36773.59 Da        Isoelectric Point: 4.9122

>NTDB_id=649759 OG212_RS01585 WP_326585470.1 398770..399792(-) (cytR) [Streptomyces sp. NBC_00391]
MDRNDGQGDKSRPVTIAFIAESAGVSVPTVSKVINGKSGVSADTRARVEELVNRYGYRKPTGANRNNVVELVFRELKHMW
AVEIIRGVERVARQHRVGVMVSEFGLHDADLPTWDDTVSRRPNCVLSVAQLSEAEREQLKAKGIPFVVFDPATELPDDVP
FVGATNWSGGRAATRHLTELGHRRIAMISGPEDQLYCCARLDGYRSAMQSAGLPVDPELVTYAPLTSEDGYEAARSLLDL
PERPTAIFTANDLQALGVYQAAREAGLRIPDDLSVVGFDDLPVVAWVDPPLTTVHQPLTEMAVAATELALTLGRGEDAPQ
AGLEIATTLTVRASTAPPKG

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=649759 OG212_RS01585 WP_326585470.1 398770..399792(-) (cytR) [Streptomyces sp. NBC_00391]
GTGGACAGGAACGACGGGCAGGGCGACAAGTCCCGGCCGGTCACGATCGCGTTCATCGCCGAGTCGGCGGGGGTGTCGGT
TCCCACCGTGTCCAAGGTGATCAACGGCAAGTCCGGCGTCTCCGCGGACACGCGGGCGCGTGTCGAGGAGCTGGTCAACA
GGTACGGCTACCGCAAGCCGACGGGTGCCAACCGGAACAACGTCGTGGAGCTCGTGTTCCGCGAGCTCAAGCACATGTGG
GCCGTCGAGATCATCCGGGGTGTCGAGCGGGTGGCCCGTCAGCACCGCGTGGGCGTCATGGTCTCCGAGTTCGGGCTGCA
CGACGCGGACCTGCCCACCTGGGACGACACCGTCTCCCGACGGCCGAACTGCGTGCTGTCCGTGGCCCAGCTCTCCGAGG
CCGAGCGGGAGCAGCTGAAGGCCAAGGGCATCCCCTTCGTCGTCTTCGACCCGGCCACGGAACTGCCGGACGACGTTCCG
TTCGTGGGCGCCACCAACTGGTCCGGCGGCCGGGCCGCCACCCGCCACCTCACCGAACTCGGGCACCGCCGCATCGCCAT
GATCAGCGGCCCCGAGGACCAGCTGTACTGCTGCGCCCGGCTGGACGGATACCGCTCCGCGATGCAGTCCGCCGGCCTGC
CGGTCGATCCCGAACTCGTCACGTACGCGCCGCTCACCAGTGAGGACGGCTACGAGGCGGCGCGCTCCCTGCTGGATCTG
CCGGAGCGCCCGACGGCGATCTTCACCGCCAACGACCTGCAGGCACTCGGTGTCTACCAGGCGGCGCGCGAGGCCGGTCT
GCGGATCCCCGACGACCTGAGCGTCGTCGGATTCGACGACCTGCCGGTCGTGGCCTGGGTGGATCCGCCCCTGACCACCG
TTCACCAGCCCCTGACCGAGATGGCCGTGGCCGCGACCGAGCTGGCGCTCACGCTCGGGCGCGGCGAGGACGCACCCCAG
GCCGGGCTGGAGATCGCGACGACCCTGACGGTCCGGGCCAGTACGGCCCCGCCGAAGGGCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-335)

Bacterial regulatory proteins, lacI family (LacI)

(16-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.657

100

0.368