Detailed information NTG0649730

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OHS81_RS21250
• Genome accession: NZ_CP107940
• Coordinates: 4848100..4849101 (+)
• Length: 333 a.a.
• NCBI ID: WP_328386260.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00400
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4843100..4854101

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHS81_RS21220 (OHS81_21230)	-	4843157..4843654 (-)	498	WP_088798290.1	MarR family transcriptional regulator	-
OHS81_RS21225 (OHS81_21235)	-	4843820..4844596 (+)	777	WP_328386256.1	class III extradiol ring-cleavage dioxygenase	-
OHS81_RS21230 (OHS81_21240)	-	4844627..4845676 (-)	1050	WP_328386257.1	questin oxidase family protein	-
OHS81_RS21235 (OHS81_21245)	-	4846035..4846514 (+)	480	WP_328391310.1	pyridoxamine 5'-phosphate oxidase family protein	-
OHS81_RS21240 (OHS81_21250)	-	4846559..4847143 (-)	585	WP_328386258.1	hypothetical protein	-
OHS81_RS21245 (OHS81_21255)	-	4847288..4847914 (-)	627	WP_328386259.1	N-acetyltransferase family protein	-
OHS81_RS21250 (OHS81_21260)	rpoS	4848100..4849101 (+)	1002	WP_328386260.1	sigma-70 family RNA polymerase sigma factor	Regulator
OHS81_RS21255 (OHS81_21265)	-	4849364..4850146 (+)	783	WP_328391312.1	DeoR/GlpR family DNA-binding transcription regulator	-
OHS81_RS21260 (OHS81_21270)	pfkB	4850143..4851090 (+)	948	WP_328386261.1	1-phosphofructokinase	-
OHS81_RS21265 (OHS81_21275)	-	4851394..4853526 (+)	2133	WP_328386262.1	fructose-specific PTS transporter subunit EIIC	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 36936.43 Da
• Isoelectric Point: 4.8195

>NTDB_id=649730 OHS81_RS21250 WP_328386260.1 4848100..4849101(+) (rpoS) [Streptomyces sp. NBC_00400]
MATRAVARRQESSSGSDGARSVRAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVYAQQILDGEVTDGNAA
AASREELEALVEESAKAKDIFIRSNLRLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQA
ITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPAEVAGELGSTPARVTDVLDWARDPVSLNMSVDDDGDTQ
FGDLLEDTSAASPEQSVLTLLRSEELEDLIDRLDHRTASIIKARYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLEL
KRMARDTGFDAAA

Nucleotide

• Length: 1002 bp

>NTDB_id=649730 OHS81_RS21250 WP_328386260.1 4848100..4849101(+) (rpoS) [Streptomyces sp. NBC_00400]
ATGGCAACCCGTGCCGTCGCCCGTCGTCAGGAAAGCAGCAGCGGTTCTGACGGGGCCCGCAGCGTTCGCGCCGTAGGCGG
GGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAAATAGCGCGTACGCCACTGCTCGACGCCGCCAAGGAGG
TGGAGCTGTCCCAGACCATCGAGGCGGGCGTTTACGCCCAGCAGATCCTGGACGGCGAGGTCACCGACGGCAATGCCGCA
GCCGCCAGCCGCGAGGAGCTCGAGGCGCTGGTGGAGGAGAGCGCGAAGGCCAAGGACATCTTCATCCGTTCCAACCTCCG
CCTGGTGGTCGCGGTCGCCCGTCGCTACCCCCGTGCCGGACTGCCCCTGCTGGACCTGATCCAGGAGGGCAACGCCGGTC
TGGTGCGTGCCGTGGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCGACGTATGCGACGTGGTGGATCCGCCAGGCC
ATCACCCGCTCCATCGCCGACCAGTCGCGCACGATCCGGCTGCCCGTGCACCTCGTCGAGGAGCTGGGCCGGATCCGCCG
GGTGCAGCGCGAGTTCAACCGCGAGAACGGCCGTGATCCGGAGCCGGCGGAGGTCGCCGGTGAGCTGGGCTCCACGCCCG
CCCGCGTCACCGACGTACTCGACTGGGCGCGTGACCCGGTCAGCCTCAACATGTCGGTGGACGACGACGGCGACACCCAG
TTCGGCGATCTGCTGGAGGACACCTCCGCGGCCTCGCCCGAGCAGTCCGTGCTCACGCTGCTGCGCAGCGAGGAGCTGGA
GGATCTGATCGACCGCCTCGACCACCGCACCGCCTCGATCATCAAGGCGCGGTACGGCATAGAGGACGGCCGTGAGCGCA
CGCTGACCGAGGTCGGCAAGCAGCACGGTCTGACCCGTGAGCGGATCCGGCAGATCGAGAAGCATGCCCTGCTGGAGCTG
AAGCGGATGGCGCGTGACACGGGATTCGACGCCGCTGCATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (101-170)

• Sigma-70, region 4 (Sigma70_r4) (270-321)

• Sigma-70 region 3 (Sigma70_r3) (180-256)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (33-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	39.867	90.39	0.36