Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OHS81_RS12090 Genome accession   NZ_CP107940
Coordinates   2778018..2779082 (-) Length   354 a.a.
NCBI ID   WP_328384790.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00400     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2773018..2784082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS81_RS12060 (OHS81_12065) - 2773588..2774076 (-) 489 WP_328384785.1 ricin-type beta-trefoil lectin domain protein -
  OHS81_RS12065 (OHS81_12070) - 2774497..2774835 (-) 339 WP_328384786.1 hypothetical protein -
  OHS81_RS12070 (OHS81_12075) - 2775153..2776139 (-) 987 WP_328384787.1 alpha/beta hydrolase -
  OHS81_RS12075 (OHS81_12080) - 2776284..2776889 (+) 606 WP_328384788.1 helix-turn-helix domain-containing protein -
  OHS81_RS12080 (OHS81_12085) - 2776935..2777189 (-) 255 WP_328384789.1 Tn3 family transposase -
  OHS81_RS12085 (OHS81_12090) - 2777488..2777967 (-) 480 Protein_2398 DUF4158 domain-containing protein -
  OHS81_RS12090 (OHS81_12095) amiE 2778018..2779082 (-) 1065 WP_328384790.1 dipeptide ABC transporter ATP-binding protein Regulator
  OHS81_RS12095 (OHS81_12100) amiE 2779069..2780109 (-) 1041 WP_328384791.1 ABC transporter ATP-binding protein Regulator
  OHS81_RS12100 (OHS81_12105) - 2780121..2781110 (-) 990 WP_328384792.1 ABC transporter permease -
  OHS81_RS12105 (OHS81_12110) - 2781103..2782026 (-) 924 WP_328384793.1 ABC transporter permease -
  OHS81_RS12110 (OHS81_12115) - 2782054..2783673 (-) 1620 WP_328384794.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38847.30 Da        Isoelectric Point: 6.9230

>NTDB_id=649708 OHS81_RS12090 WP_328384790.1 2778018..2779082(-) (amiE) [Streptomyces sp. NBC_00400]
MGPGEGGTPAAGAPEPLLEVRDLVKHFPLTRGVLFHKQVGAVRAVDGVSFDLHKGETLGIVGESGCGKSTVAKLLVGLER
PTAGQIRYRGEDISTLSGRALRAVRRNIQMVFQDPYTSLNPRMTVGDIIGEPYEIHPEVAPKGDRRRKVRELLDVVGLNP
EYINRYPHQFSGGQRQRIGIARGLALRPEIIVADEPVSALDVSVQAQVVNLLEQLQNEFDLSYVFIAHDLSVVRHISDRV
AVMYLGRLAETGTDEQIYEHPTHPYTQALLSAVPVPDPDARSHRERILLTGDVPSPAAPPSGCRFRTRCWKARQLCADVV
PPLEVPVEFRETKGPAGHASACHFAEERQVVPSE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=649708 OHS81_RS12090 WP_328384790.1 2778018..2779082(-) (amiE) [Streptomyces sp. NBC_00400]
ATGGGGCCCGGTGAGGGTGGCACCCCGGCGGCCGGTGCCCCGGAACCGCTGCTGGAGGTCCGCGACCTGGTCAAACACTT
CCCGCTCACGCGGGGTGTGCTCTTCCACAAACAGGTCGGCGCGGTCCGGGCCGTCGACGGTGTCTCCTTCGACCTCCACA
AGGGCGAAACGCTCGGCATCGTCGGCGAATCGGGCTGCGGCAAGTCCACGGTCGCCAAGCTGCTGGTCGGCCTGGAGCGT
CCGACGGCAGGTCAGATCCGGTACCGCGGCGAGGACATCAGCACCCTCTCCGGGCGGGCCCTGCGGGCCGTGCGCCGCAA
TATCCAGATGGTGTTCCAGGACCCCTACACCTCCCTGAACCCCCGGATGACCGTCGGCGACATCATCGGCGAGCCGTACG
AGATCCACCCCGAGGTGGCCCCCAAGGGAGACCGCCGCAGAAAGGTCCGCGAACTCCTGGACGTGGTGGGGCTCAACCCC
GAGTACATCAACCGCTATCCGCACCAGTTCTCCGGCGGCCAGCGCCAGCGCATCGGTATCGCCCGCGGCCTCGCGCTGCG
CCCGGAGATCATCGTCGCCGACGAACCGGTCTCCGCGCTGGACGTCTCCGTCCAGGCCCAAGTGGTCAACCTGCTGGAGC
AGTTGCAGAACGAGTTCGATCTTTCCTACGTCTTCATCGCCCACGATCTGTCCGTCGTACGGCACATCTCCGACCGCGTC
GCGGTGATGTACCTGGGCCGGCTCGCCGAGACCGGCACCGACGAGCAGATCTACGAGCACCCCACCCACCCGTACACCCA
GGCCCTGCTGTCCGCCGTCCCCGTCCCCGACCCGGACGCCCGCAGCCACCGCGAGCGCATCCTGCTCACGGGCGATGTCC
CCTCGCCCGCCGCCCCGCCCTCCGGCTGCCGCTTCCGCACGCGGTGCTGGAAGGCCCGGCAGCTGTGCGCGGATGTCGTG
CCACCGCTGGAAGTGCCGGTGGAATTCCGCGAGACAAAGGGCCCGGCCGGGCATGCCTCGGCGTGTCACTTCGCCGAGGA
GCGGCAGGTGGTGCCCAGCGAGTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(250-316)

ABC transporter (ABC_tran)

(46-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

39.053

95.48

0.373
  oppD Streptococcus mutans UA159

41.64

89.548

0.373
  amiF Streptococcus thermophilus LMG 18311

49.064

75.424

0.37
  amiE Streptococcus thermophilus LMG 18311

38.643

95.763

0.37
  amiE Streptococcus thermophilus LMD-9

38.643

95.763

0.37
  amiF Streptococcus thermophilus LMD-9

48.689

75.424

0.367
  amiF Streptococcus salivarius strain HSISS4

48.12

75.141

0.362