Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   L2Z33_RS15315 Genome accession   NZ_CP091343
Coordinates   3176603..3177421 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain AB222-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3171603..3182421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z33_RS15300 (L2Z33_15300) pilE 3171820..3172245 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  L2Z33_RS15305 (L2Z33_15305) pilY2 3172242..3172724 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  L2Z33_RS15310 (L2Z33_15310) pilY1 3172737..3176591 (-) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  L2Z33_RS15315 (L2Z33_15315) pilX 3176603..3177421 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  L2Z33_RS15320 (L2Z33_15320) pilW 3177418..3178419 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  L2Z33_RS15325 (L2Z33_15325) pilV 3178420..3178980 (-) 561 WP_086221688.1 type IV pilus modification protein PilV Machinery gene
  L2Z33_RS15330 (L2Z33_15330) fimU 3178974..3179447 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  L2Z33_RS15335 (L2Z33_15335) ispH 3179617..3180567 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L2Z33_RS15340 (L2Z33_15340) gmk 3180690..3181319 (+) 630 WP_000015937.1 guanylate kinase -
  L2Z33_RS15345 (L2Z33_15345) rpoZ 3181392..3181670 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  L2Z33_RS15350 (L2Z33_15350) - 3181709..3181839 (+) 131 Protein_2999 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=649704 L2Z33_RS15315 WP_000149374.1 3176603..3177421(-) (pilX) [Acinetobacter baumannii strain AB222-VUB]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=649704 L2Z33_RS15315 WP_000149374.1 3176603..3177421(-) (pilX) [Acinetobacter baumannii strain AB222-VUB]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCTATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993