Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS81_RS02225 Genome accession   NZ_CP107940
Coordinates   481473..482123 (+) Length   216 a.a.
NCBI ID   WP_328381907.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00400     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 476473..487123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS81_RS02205 (OHS81_02200) - 476597..478297 (+) 1701 WP_328381899.1 CocE/NonD family hydrolase -
  OHS81_RS02210 (OHS81_02205) - 478459..479193 (-) 735 WP_328381901.1 ABC transporter permease -
  OHS81_RS02215 (OHS81_02210) - 479198..480127 (-) 930 WP_328381903.1 ATP-binding cassette domain-containing protein -
  OHS81_RS02220 (OHS81_02215) - 480236..481468 (+) 1233 WP_328381905.1 histidine kinase -
  OHS81_RS02225 (OHS81_02220) vraR 481473..482123 (+) 651 WP_328381907.1 response regulator transcription factor Regulator
  OHS81_RS02230 (OHS81_02225) - 482210..483397 (+) 1188 WP_328381909.1 ROK family transcriptional regulator -
  OHS81_RS02235 (OHS81_02230) - 483574..484320 (-) 747 WP_328381912.1 GntR family transcriptional regulator -
  OHS81_RS02240 (OHS81_02235) - 484620..485291 (+) 672 WP_328381914.1 aspartate/glutamate racemase family protein -
  OHS81_RS02245 (OHS81_02240) - 485524..486366 (+) 843 WP_328381916.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23151.81 Da        Isoelectric Point: 6.5052

>NTDB_id=649690 OHS81_RS02225 WP_328381907.1 481473..482123(+) (vraR) [Streptomyces sp. NBC_00400]
MPISVLLVDDEPLVRAGLRAILEAQTDIEVAGEAADGASVVPLVRKVRPDVIAMDVRMPLLDGIEATRAVLRSVPGPPRI
LVITTFEEDEYVYEALRAGADGFLLKRSRPAEIVHAVRLVAEGGSLLLPAALRTMAAGRRNERARADFERAALTARERQV
LRLMSRGLSNVEIAGELVLGAETVKTHVSSVLGKLGARDRTQAVIAAYESGFVSPG

Nucleotide


Download         Length: 651 bp        

>NTDB_id=649690 OHS81_RS02225 WP_328381907.1 481473..482123(+) (vraR) [Streptomyces sp. NBC_00400]
GTGCCGATTTCCGTACTCCTGGTCGACGACGAGCCGCTGGTACGCGCAGGGCTGCGCGCCATTCTGGAAGCGCAGACCGA
TATCGAAGTGGCGGGCGAGGCGGCGGACGGAGCGTCCGTCGTCCCGCTGGTGCGCAAGGTGCGGCCCGATGTGATCGCCA
TGGATGTACGGATGCCGCTCCTGGACGGCATCGAGGCCACTCGCGCGGTGCTGCGCTCGGTGCCCGGGCCGCCCCGGATC
CTCGTCATCACCACGTTCGAGGAGGACGAGTACGTTTACGAGGCGCTGCGCGCGGGCGCGGACGGCTTTCTGCTCAAGCG
CTCCCGGCCGGCCGAGATCGTGCACGCGGTGCGGCTCGTTGCCGAAGGCGGATCGCTGTTGCTCCCCGCGGCGCTGCGCA
CCATGGCGGCCGGCCGCCGCAACGAGCGCGCCCGGGCGGACTTCGAGCGGGCGGCGCTCACCGCACGGGAGCGGCAGGTG
CTGCGGCTGATGTCCCGTGGACTGTCGAACGTGGAGATCGCCGGCGAGCTCGTCCTGGGAGCCGAGACCGTGAAGACGCA
TGTCAGCTCGGTGCTGGGGAAGCTGGGGGCCAGGGACCGCACCCAGGCAGTGATCGCCGCGTACGAGTCCGGCTTCGTCT
CGCCCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(152-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.121

99.074

0.407