Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHS59_RS43385 Genome accession   NZ_CP107935
Coordinates   10133730..10134722 (-) Length   330 a.a.
NCBI ID   WP_328498845.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00414     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 10128730..10139722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS59_RS43375 (OHS59_43385) - 10128997..10133241 (-) 4245 WP_328498843.1 trypsin-like peptidase domain-containing protein -
  OHS59_RS43380 (OHS59_43390) - 10133225..10133536 (-) 312 WP_328498844.1 trypco2 family protein -
  OHS59_RS43385 (OHS59_43395) cytR 10133730..10134722 (-) 993 WP_328498845.1 LacI family DNA-binding transcriptional regulator Regulator
  OHS59_RS43390 (OHS59_43400) - 10135051..10136769 (+) 1719 WP_328498846.1 discoidin domain-containing protein -
  OHS59_RS43395 (OHS59_43405) - 10137038..10138372 (+) 1335 WP_328498847.1 DUF1996 domain-containing protein -
  OHS59_RS43400 (OHS59_43410) - 10138384..10138959 (+) 576 WP_328498848.1 DUF305 domain-containing protein -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 35239.17 Da        Isoelectric Point: 5.7382

>NTDB_id=649685 OHS59_RS43385 WP_328498845.1 10133730..10134722(-) (cytR) [Streptomyces sp. NBC_00414]
MKRPTLEVVAARAGVSKSSVSRVINGETTVAPEIRDVVMQAVHELGYVPNGAARNLVTRRTDTLAVVVSDPPQGVVSDDP
LFSAVVRAVSRELEKAGKRLVLMLAESDQSRTRVVEYIAGGHVDGVLLVALHGTDSLPAALARQGLPVVSFNRTSAQDVP
YVALDNAGGAALAVRHLLERGRRRIATITGPLELYEARERLDGYRQALRDTGRRSIVALGDFTRVSGAEAMRQLLEDDPD
LDAVFASNDLMAIGALRTLQKAGRRVPEDVAVIGFDDIEAASYTSPALTSVRSPMADQATAAVHLLLSLIDGGPTDPVIM
PNELVVREST

Nucleotide


Download         Length: 993 bp        

>NTDB_id=649685 OHS59_RS43385 WP_328498845.1 10133730..10134722(-) (cytR) [Streptomyces sp. NBC_00414]
ATGAAACGGCCCACTCTGGAAGTGGTCGCCGCGCGGGCGGGCGTGTCCAAATCGAGCGTCTCCCGCGTCATCAACGGCGA
GACGACGGTCGCCCCTGAGATCCGGGACGTCGTCATGCAGGCGGTGCACGAACTGGGTTACGTGCCCAACGGGGCGGCCC
GCAACCTCGTCACCCGACGCACGGACACCCTCGCCGTGGTGGTCTCCGACCCGCCGCAGGGAGTCGTCTCCGACGACCCC
CTCTTCTCCGCGGTGGTCCGCGCCGTCAGCAGAGAGCTGGAGAAGGCGGGCAAACGGCTCGTGCTCATGCTCGCGGAATC
GGACCAGAGCCGGACCCGCGTGGTGGAGTACATCGCCGGCGGGCACGTGGACGGTGTGCTCCTGGTCGCCCTGCACGGCA
CGGACTCGCTGCCGGCCGCGCTCGCCCGGCAGGGTCTGCCCGTCGTGTCCTTCAACCGCACCTCCGCACAGGACGTCCCG
TACGTGGCGCTGGACAACGCGGGTGGAGCGGCACTGGCGGTACGCCACCTTCTGGAGCGCGGCCGGCGGCGGATCGCCAC
CATCACCGGGCCGCTCGAACTCTACGAGGCGCGTGAGCGCCTCGACGGCTACCGGCAGGCGCTGCGGGACACCGGCCGTC
GCTCGATCGTGGCACTGGGCGACTTCACGAGAGTCTCCGGCGCCGAAGCCATGCGCCAGCTCCTGGAGGACGATCCCGAC
CTCGACGCGGTGTTCGCGTCCAACGACCTGATGGCGATCGGAGCCCTGCGCACCCTCCAGAAGGCGGGCCGACGCGTTCC
CGAGGACGTGGCGGTGATCGGCTTCGACGACATCGAGGCCGCGTCCTACACGAGCCCCGCGCTCACCTCGGTACGCAGCC
CGATGGCGGACCAGGCGACCGCGGCCGTCCACCTGCTCCTCAGCCTGATAGACGGCGGCCCCACGGACCCGGTGATCATG
CCGAACGAACTCGTGGTGCGCGAATCGACCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-50)

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.503

100

0.364