Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHS59_RS42320 Genome accession   NZ_CP107935
Coordinates   9888763..9889779 (-) Length   338 a.a.
NCBI ID   WP_328498647.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00414     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 9883763..9894779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS59_RS42300 (OHS59_42315) - 9885207..9886052 (-) 846 WP_328498644.1 MIP/aquaporin family protein -
  OHS59_RS42305 (OHS59_42320) - 9886234..9887218 (-) 985 Protein_8368 alpha/beta hydrolase -
  OHS59_RS42310 (OHS59_42325) - 9887382..9888362 (+) 981 WP_328498645.1 TIGR01777 family oxidoreductase -
  OHS59_RS42315 (OHS59_42330) - 9888359..9888670 (+) 312 WP_328498646.1 hypothetical protein -
  OHS59_RS42320 (OHS59_42335) cytR 9888763..9889779 (-) 1017 WP_328498647.1 LacI family DNA-binding transcriptional regulator Regulator
  OHS59_RS42325 (OHS59_42340) - 9890063..9891376 (+) 1314 WP_328498648.1 extracellular solute-binding protein -
  OHS59_RS42330 (OHS59_42345) - 9891505..9892500 (+) 996 WP_328498649.1 sugar ABC transporter permease -
  OHS59_RS42335 (OHS59_42350) - 9892514..9893455 (+) 942 WP_328498650.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36295.08 Da        Isoelectric Point: 5.9023

>NTDB_id=649683 OHS59_RS42320 WP_328498647.1 9888763..9889779(-) (cytR) [Streptomyces sp. NBC_00414]
MRGRQRPTIKTVAARAGVGRTTVSRVINGSELVSEKARAAVLAAIAELNYVPNSVARGLVTSRTNSVALVIPESESRLGS
EPYFSAVIRGVSTALATTRTQLQLVLVRDQAERDQLTESVAERRVDGVLLVSVHEHDPLPGRLEDMGLPTVLAGRRSPAE
SLTHVHSDNAGGAAAAVEHLLARGRRTIATISGPLDMDVARSRLQGWREALEKAGHEATDRLVASGDFTEEGGEAAMRSL
LERVPSLDAVFVASDVMAAGALVELRRQRRGVPDDVAVVGFDDSIIARHTNPPLTSVRQPVEEIGETIARLLLEEIGDPE
EPRQHVVLPTELVVRESS

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=649683 OHS59_RS42320 WP_328498647.1 9888763..9889779(-) (cytR) [Streptomyces sp. NBC_00414]
ATGCGGGGCAGACAGCGCCCGACCATCAAGACGGTGGCCGCGCGCGCCGGTGTCGGACGCACGACGGTTTCACGAGTCAT
CAACGGCTCGGAACTCGTCAGCGAGAAGGCCCGGGCGGCCGTTCTCGCCGCCATCGCCGAGCTGAACTACGTACCGAACT
CGGTCGCCAGGGGCCTGGTGACGAGCCGGACGAACTCCGTGGCCCTGGTGATTCCCGAGTCCGAGAGCAGACTGGGCTCC
GAGCCGTACTTCTCGGCGGTCATCCGCGGGGTGAGCACCGCCCTCGCGACGACCCGCACACAGCTCCAACTGGTTCTCGT
ACGCGACCAGGCCGAGCGGGACCAGCTCACCGAGTCGGTGGCGGAACGCCGTGTCGACGGGGTCCTGCTGGTCTCGGTGC
ACGAACACGACCCGCTGCCGGGCCGGCTGGAGGACATGGGGCTGCCCACCGTCCTCGCCGGGCGCCGCTCCCCCGCCGAG
TCCCTCACCCATGTGCACTCGGACAACGCGGGCGGAGCCGCGGCGGCCGTCGAGCACCTGCTCGCACGGGGGCGGCGGAC
CATCGCCACGATCAGCGGGCCCCTCGACATGGACGTGGCACGCAGCCGGCTCCAGGGATGGCGCGAGGCCCTGGAGAAGG
CGGGCCACGAAGCCACGGACCGGCTGGTGGCCTCCGGCGACTTCACCGAGGAGGGCGGTGAGGCCGCGATGCGTTCACTC
CTTGAACGAGTCCCCTCGCTCGACGCCGTGTTCGTGGCCTCGGACGTCATGGCAGCGGGAGCGCTCGTGGAGTTGCGCAG
GCAGCGGCGCGGTGTCCCCGACGACGTGGCGGTGGTCGGGTTCGACGACTCCATCATCGCCCGGCACACCAACCCGCCCC
TCACCAGCGTGCGTCAGCCCGTCGAGGAGATCGGCGAGACGATCGCCCGCCTCCTCCTGGAGGAGATCGGCGACCCCGAG
GAGCCGCGTCAGCACGTCGTGCTTCCCACCGAACTCGTCGTACGCGAATCGTCGTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(177-338)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.86

100

0.364