Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS59_RS29920 Genome accession   NZ_CP107935
Coordinates   6883909..6884577 (+) Length   222 a.a.
NCBI ID   WP_328496449.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00414     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6878909..6889577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS59_RS29905 (OHS59_29910) - 6879218..6879928 (+) 711 WP_328496447.1 TerB family tellurite resistance protein -
  OHS59_RS29910 (OHS59_29915) - 6880334..6882463 (+) 2130 WP_328496448.1 MMPL family transporter -
  OHS59_RS29915 (OHS59_29920) - 6882668..6883912 (+) 1245 WP_328499414.1 histidine kinase -
  OHS59_RS29920 (OHS59_29925) vraR 6883909..6884577 (+) 669 WP_328496449.1 response regulator transcription factor Regulator
  OHS59_RS29925 (OHS59_29930) - 6884832..6885962 (+) 1131 Protein_5914 sialidase family protein -
  OHS59_RS29930 (OHS59_29935) - 6886002..6887000 (-) 999 WP_328496450.1 RNA polymerase subunit sigma-70 -
  OHS59_RS29935 (OHS59_29940) - 6887110..6888045 (-) 936 WP_328496451.1 dihydrodipicolinate synthase family protein -
  OHS59_RS29940 (OHS59_29945) - 6888045..6889145 (-) 1101 WP_328496452.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23357.97 Da        Isoelectric Point: 4.6224

>NTDB_id=649660 OHS59_RS29920 WP_328496449.1 6883909..6884577(+) (vraR) [Streptomyces sp. NBC_00414]
MTIRVLLADDQNLVRASFAMLVSSAGDMEVVAEAGTGREAVELARSARADLVVMDIRMPDLDGIEATRLIAADEDLAGVK
VLVLTTYDTDEHIVDALRAGASGFLVKDIRPAELLDAIRIVAAGESLLSPGPTARLIARFLRAPDAVTSAVGGPDGLSER
ERQVLALVARGLNNTEIAETLGLSPLTAKTHVSRIMGKLGVRDRAQLVIVAYESGLVIPGAV

Nucleotide


Download         Length: 669 bp        

>NTDB_id=649660 OHS59_RS29920 WP_328496449.1 6883909..6884577(+) (vraR) [Streptomyces sp. NBC_00414]
ATGACGATCCGCGTACTGCTCGCAGACGACCAGAATCTCGTACGGGCCTCGTTCGCGATGCTCGTCTCGTCGGCCGGGGA
CATGGAGGTCGTCGCCGAGGCGGGCACCGGGCGGGAGGCCGTGGAGCTGGCCCGTTCCGCGCGCGCCGACCTCGTCGTGA
TGGACATCCGCATGCCCGACCTGGACGGCATCGAGGCGACCCGGCTCATCGCCGCCGACGAGGATCTCGCGGGGGTGAAG
GTGCTCGTCCTGACGACGTACGACACCGACGAGCACATCGTCGACGCGCTGCGGGCCGGGGCGTCCGGCTTCCTCGTGAA
GGACATCCGCCCGGCCGAACTCCTCGACGCCATCCGGATCGTGGCCGCAGGGGAGTCCCTGCTCTCCCCGGGCCCCACCG
CACGGCTCATCGCCCGTTTCCTGCGGGCACCCGACGCGGTGACGTCCGCGGTGGGCGGTCCCGACGGGCTGTCCGAGCGG
GAGCGGCAGGTGCTCGCCCTGGTCGCGCGCGGGCTCAACAACACCGAGATCGCCGAGACGCTCGGGCTCAGCCCGCTGAC
GGCGAAGACCCATGTCAGCCGGATCATGGGCAAGTTGGGGGTGCGCGACCGCGCGCAGCTGGTGATCGTGGCGTACGAGT
CGGGGCTCGTGATACCCGGGGCGGTCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-119)

Bacterial regulatory proteins, luxR family (GerE)

(156-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.327

97.748

0.365