Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHS59_RS12965 Genome accession   NZ_CP107935
Coordinates   3033183..3033965 (+) Length   260 a.a.
NCBI ID   WP_189774560.1    Uniprot ID   A0ABZ1JCH7
Organism   Streptomyces sp. NBC_00414     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3028183..3038965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS59_RS12955 (OHS59_12970) - 3029059..3031953 (-) 2895 WP_328493566.1 vitamin B12-dependent ribonucleotide reductase -
  OHS59_RS12960 (OHS59_12975) nrdR 3032104..3032655 (-) 552 WP_328493567.1 transcriptional regulator NrdR -
  OHS59_RS12965 (OHS59_12980) dinR/lexA 3033183..3033965 (+) 783 WP_189774560.1 transcriptional repressor LexA Regulator
  OHS59_RS12970 (OHS59_12985) - 3034119..3036113 (-) 1995 WP_328493568.1 ATP-dependent DNA helicase -
  OHS59_RS12975 (OHS59_12990) - 3036226..3038280 (-) 2055 WP_328493569.1 IucA/IucC family siderophore biosynthesis protein -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 28163.87 Da        Isoelectric Point: 7.3613

>NTDB_id=649615 OHS59_RS12965 WP_189774560.1 3033183..3033965(+) (dinR/lexA) [Streptomyces sp. NBC_00414]
MTTTADSATITAQDRSQGRFEPVQAMNETANQEGPKPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMR
EIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSTAQPTDTAGKPAASYVPLVGRIAAGGPILAEESVE
DVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAYQ
PIPGDEATILGKVVAVLRRI

Nucleotide


Download         Length: 783 bp        

>NTDB_id=649615 OHS59_RS12965 WP_189774560.1 3033183..3033965(+) (dinR/lexA) [Streptomyces sp. NBC_00414]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGATTTGAGCCGGTGCAAGCCATGAA
TGAAACCGCGAACCAGGAGGGGCCCAAGCCCGCACGCTCCCTGCCGGGCCGACCTCCAGGCATCCGGGCGGACAGCTCCG
GACTCACCGACCGGCAACGCCGGGTCATCGAGGTCATCAGGGACTCCGTCCAGCGGCGGGGGTACCCGCCGTCCATGAGG
GAGATCGGGCAGGCCGTCGGCCTCTCCAGCACCTCCTCGGTCGCCCATCAGCTGATGGCACTGGAGCGCAAGGGCTTCCT
GCGCCGCGATCCGCACCGCCCCAGGGCCTACGAGGTCCGCGGATCCGACCAGTCCACCGCGCAGCCCACCGACACGGCCG
GCAAGCCGGCGGCGTCGTACGTCCCACTGGTCGGCCGGATCGCCGCAGGCGGTCCGATCCTCGCCGAGGAGTCGGTCGAG
GACGTCTTCCCGCTGCCCCGGCAGCTGGTCGGCGACGGCGAGCTGTTCGTGCTGAAGGTCGTCGGCGACTCGATGATCGA
AGCCGCGATCTGCGACGGCGACTGGGTGACCGTCCGCCGCCAGCCGGTCGCGGAGAACGGCGACATCGTGGCGGCCATGC
TGGACGGCGAGGCGACGGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTGTGGCTCCTGCCGCACAACTCGGCCTACCAG
CCCATCCCGGGCGACGAGGCGACCATCCTCGGGAAGGTCGTGGCGGTGCTCCGGCGGATCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(53-116)

Peptidase S24-like (Peptidase_S24)

(142-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.238

80.769

0.365