Detailed information NTG0649604

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OHS59_RS07920
• Genome accession: NZ_CP107935
• Coordinates: 1806355..1807359 (+)
• Length: 334 a.a.
• NCBI ID: WP_328492669.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00414
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1801355..1812359

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHS59_RS07910 (OHS59_07920)	-	1802412..1804184 (-)	1773	WP_328492667.1	putative Ig domain-containing protein	-
OHS59_RS07915 (OHS59_07925)	-	1804336..1805952 (-)	1617	WP_328492668.1	glycoside hydrolase family 43 protein	-
OHS59_RS07920 (OHS59_07930)	rpoS	1806355..1807359 (+)	1005	WP_328492669.1	RNA polymerase sigma factor	Regulator
OHS59_RS07925 (OHS59_07935)	-	1807420..1808547 (-)	1128	WP_328492670.1	LLM class flavin-dependent oxidoreductase	-
OHS59_RS07930 (OHS59_07940)	-	1808563..1809654 (-)	1092	WP_328492671.1	LLM class flavin-dependent oxidoreductase	-
OHS59_RS07935 (OHS59_07945)	-	1809651..1811060 (-)	1410	WP_328492672.1	NtaA/DmoA family FMN-dependent monooxygenase	-
OHS59_RS07940 (OHS59_07950)	-	1811080..1812357 (-)	1278	WP_328492673.1	LLM class flavin-dependent oxidoreductase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37525.68 Da
• Isoelectric Point: 5.0915

>NTDB_id=649604 OHS59_RS07920 WP_328492669.1 1806355..1807359(+) (rpoS) [Streptomyces sp. NBC_00414]
METDTQEQQALPLSPDDESDAPEPVLTSDGASVDQVRDYLKVISRVRLLTAAQEVDLARRIEAGLFAQRKLDEEHALDPV
FRQELTAVAEDGLRAKSHLTEANLRLVVSIAKRYTRRGLNFLDLIQEGNTGLIRAVEKFDYVKGFKFSTYATWWIRQAIS
RALADQSRTIRIPVHAVEAINKVARLRRELIQELGVEPTVEQIAEKLDLPVSKIVELDTYIKEPVSLHMPLGEEGGTELG
DVIEDSESVSPFDAVSFRLLRDTIQTVLSHMTPREAGIITLRYGLLDGQAKTLEEIGQVYGVTRERIRQIESKTMSKLRH
PSRSQALQDYVGLG

Nucleotide

• Length: 1005 bp

>NTDB_id=649604 OHS59_RS07920 WP_328492669.1 1806355..1807359(+) (rpoS) [Streptomyces sp. NBC_00414]
ATGGAGACAGACACCCAGGAGCAGCAGGCCCTTCCGCTGTCTCCGGACGACGAGTCCGACGCCCCTGAACCCGTGCTCAC
GTCCGACGGCGCCAGCGTCGATCAGGTCCGCGACTACCTCAAGGTGATCAGCCGCGTCCGCCTGCTCACCGCCGCGCAGG
AGGTGGATCTCGCCAGACGGATCGAGGCCGGCCTCTTCGCGCAGCGGAAGCTCGACGAGGAACACGCTCTGGACCCGGTG
TTCCGGCAGGAGCTGACCGCGGTCGCCGAGGACGGTCTCCGGGCGAAGTCCCACCTCACCGAGGCGAACCTCAGGCTGGT
CGTGTCCATAGCCAAGCGCTACACGAGGCGCGGGCTCAACTTCCTGGACCTGATCCAGGAGGGCAACACGGGTCTGATCC
GGGCCGTCGAGAAGTTCGACTACGTCAAGGGATTCAAGTTCTCGACCTACGCGACCTGGTGGATCCGGCAGGCGATTTCA
CGCGCTCTGGCCGATCAGAGCCGCACCATCCGTATTCCGGTCCACGCGGTGGAAGCGATCAACAAAGTGGCCCGACTGCG
TCGGGAATTGATCCAGGAGCTGGGCGTCGAGCCCACGGTGGAGCAGATCGCGGAAAAACTGGATCTACCCGTATCGAAGA
TCGTGGAACTCGACACCTACATCAAGGAACCCGTCTCCCTGCATATGCCGCTGGGCGAGGAGGGCGGCACCGAACTCGGT
GACGTGATCGAGGACAGTGAGAGTGTCTCCCCCTTCGACGCGGTGTCGTTCCGTCTCCTCAGGGACACCATCCAGACCGT
CCTGTCCCATATGACCCCGCGCGAAGCGGGCATCATCACCCTCCGCTACGGGCTCCTGGACGGCCAGGCGAAGACCCTGG
AGGAGATCGGCCAGGTCTACGGGGTCACCCGTGAGCGCATCCGCCAGATCGAGTCCAAGACGATGTCGAAGCTGCGCCAC
CCGTCGCGCTCGCAGGCACTGCAGGACTACGTGGGCCTGGGCTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (178-254)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 region 2 (Sigma70_r2) (100-168)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (36-67)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.199	90.12	0.362