Detailed information NTG0064960

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H7Q99_RS05545
• Genome accession: NZ_AP021998
• Coordinates: 1171337..1172329 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain WP3-W18-ESBL-07
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1166337..1177329

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7Q99_RS05515 (WP3W18E07_10810)	ispD	1166398..1167108 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H7Q99_RS05520 (WP3W18E07_10820)	ispF	1167108..1167587 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H7Q99_RS05525 (WP3W18E07_10830)	truD	1167584..1168633 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
H7Q99_RS05530 (WP3W18E07_10840)	surE	1168614..1169375 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H7Q99_RS05535 (WP3W18E07_10850)	pcm	1169369..1169995 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H7Q99_RS05540 (WP3W18E07_10860)	nlpD	1170180..1171274 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
H7Q99_RS05545 (WP3W18E07_10870)	rpoS	1171337..1172329 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H7Q99_RS05550 (WP3W18E07_10880)	-	1172500..1173051 (-)	552	WP_001179444.1	flavodoxin family protein	-
H7Q99_RS05555 (WP3W18E07_10890)	-	1173276..1174319 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
H7Q99_RS05560 (WP3W18E07_10900)	ygbN	1174462..1175826 (-)	1365	WP_000104433.1	GntP family transporter	-
H7Q99_RS05565 (WP3W18E07_10910)	ygbM	1175915..1176691 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=64960 H7Q99_RS05545 WP_000081550.1 1171337..1172329(+) (rpoS) [Escherichia coli strain WP3-W18-ESBL-07]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=64960 H7Q99_RS05545 WP_000081550.1 1171337..1172329(+) (rpoS) [Escherichia coli strain WP3-W18-ESBL-07]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715