Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   L2Z35_RS02125 Genome accession   NZ_CP091341
Coordinates   395972..396790 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain AB226-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 390972..401790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z35_RS02110 (L2Z35_02110) pilE 391189..391614 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  L2Z35_RS02115 (L2Z35_02115) pilY2 391611..392093 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  L2Z35_RS02120 (L2Z35_02120) pilY1 392106..395960 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  L2Z35_RS02125 (L2Z35_02125) pilX 395972..396790 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  L2Z35_RS02130 (L2Z35_02130) pilW 396787..397788 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  L2Z35_RS02135 (L2Z35_02135) pilV 397789..398349 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  L2Z35_RS02140 (L2Z35_02140) fimU 398343..398816 (-) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  L2Z35_RS02145 (L2Z35_02145) ispH 398986..399936 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L2Z35_RS02150 (L2Z35_02150) gmk 400059..400688 (+) 630 WP_000015937.1 guanylate kinase -
  L2Z35_RS02155 (L2Z35_02155) rpoZ 400761..401039 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  L2Z35_RS02160 (L2Z35_02160) - 401078..401207 (+) 130 Protein_411 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=649594 L2Z35_RS02125 WP_000149374.1 395972..396790(-) (pilX) [Acinetobacter baumannii strain AB226-VUB]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=649594 L2Z35_RS02125 WP_000149374.1 395972..396790(-) (pilX) [Acinetobacter baumannii strain AB226-VUB]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993