Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS82_RS38640 Genome accession   NZ_CP107928
Coordinates   8771686..8772354 (+) Length   222 a.a.
NCBI ID   WP_057581585.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00425     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8766686..8777354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS82_RS38615 (OHS82_38655) - 8767838..8768083 (-) 246 WP_328435557.1 hypothetical protein -
  OHS82_RS38620 (OHS82_38660) - 8768124..8768312 (+) 189 WP_328435558.1 hypothetical protein -
  OHS82_RS38625 (OHS82_38665) - 8768586..8769542 (+) 957 WP_057581579.1 ATP-binding cassette domain-containing protein -
  OHS82_RS38630 (OHS82_38670) - 8769539..8770378 (+) 840 WP_057581581.1 ABC transporter permease -
  OHS82_RS38635 (OHS82_38675) - 8770406..8771689 (+) 1284 WP_328435559.1 sensor histidine kinase -
  OHS82_RS38640 (OHS82_38680) vraR 8771686..8772354 (+) 669 WP_057581585.1 response regulator transcription factor Regulator
  OHS82_RS38645 (OHS82_38685) - 8772839..8773423 (+) 585 WP_057581587.1 TetR/AcrR family transcriptional regulator -
  OHS82_RS38650 (OHS82_38690) - 8773434..8775179 (-) 1746 WP_328435560.1 FAD-dependent monooxygenase -
  OHS82_RS38655 (OHS82_38695) - 8775593..8776336 (+) 744 WP_057581589.1 hypothetical protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24079.55 Da        Isoelectric Point: 6.1549

>NTDB_id=649581 OHS82_RS38640 WP_057581585.1 8771686..8772354(+) (vraR) [Streptomyces sp. NBC_00425]
MTTVLIVDDQPLQRYGFHLLLGSVPETDVVGEAAHGAEAVRKTAELRPDVVLMDVRMPGMDGIEATRRIVAAGGRSHVLV
LTTFDLDEYVHAALRAGASGFLLKDARPEELLAGIRAVAVGDAVIAPALTRRLLEEYAQYVPSHRTDPAEDPRLTSLTDR
EREILVAVGKGWTNGEIATRFVLSESTVKTHVGRVLAKIGARDRIQAVIFAYDHGLARPTAD

Nucleotide


Download         Length: 669 bp        

>NTDB_id=649581 OHS82_RS38640 WP_057581585.1 8771686..8772354(+) (vraR) [Streptomyces sp. NBC_00425]
ATGACCACCGTGCTCATCGTGGACGACCAGCCGCTGCAACGCTACGGCTTCCACCTGCTCCTGGGCTCCGTCCCCGAGAC
CGATGTCGTCGGTGAGGCCGCCCACGGCGCCGAGGCCGTCCGCAAGACGGCCGAACTGCGTCCGGACGTCGTCCTGATGG
ACGTCCGCATGCCCGGCATGGACGGCATCGAGGCCACCCGCCGCATCGTCGCCGCCGGCGGCCGCTCGCACGTCCTCGTG
CTCACGACGTTCGACCTCGACGAGTACGTCCACGCCGCCCTGCGGGCCGGCGCGAGCGGGTTCCTGCTCAAGGACGCGCG
TCCCGAGGAGCTCCTCGCCGGGATCCGCGCGGTCGCCGTCGGCGACGCGGTCATCGCGCCCGCTCTCACCCGCCGCCTCC
TTGAGGAGTACGCCCAGTACGTCCCCTCCCACAGAACCGACCCGGCCGAGGACCCGAGGCTCACCTCCCTGACCGACCGT
GAACGCGAGATCCTCGTGGCCGTCGGCAAAGGCTGGACCAACGGGGAGATCGCCACGCGGTTCGTGCTGTCCGAGTCCAC
GGTCAAGACGCATGTCGGCCGTGTCCTGGCCAAGATCGGAGCCCGCGACCGCATCCAGGCCGTGATCTTCGCCTACGACC
ACGGCCTCGCCCGGCCCACCGCGGACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-211)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.674

96.847

0.365