Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHS82_RS28465 Genome accession   NZ_CP107928
Coordinates   6523271..6525004 (-) Length   577 a.a.
NCBI ID   WP_057574792.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00425     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6518271..6530004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS82_RS28455 (OHS82_28455) - 6519962..6521248 (+) 1287 WP_079040936.1 RNA polymerase sigma factor -
  OHS82_RS28460 (OHS82_28460) rcrQ 6521343..6523271 (-) 1929 WP_057574791.1 ABC transporter ATP-binding protein Regulator
  OHS82_RS28465 (OHS82_28465) rcrP 6523271..6525004 (-) 1734 WP_057574792.1 ABC transporter ATP-binding protein Regulator
  OHS82_RS28470 (OHS82_28470) - 6525168..6526622 (-) 1455 WP_057574793.1 FGGY family carbohydrate kinase -
  OHS82_RS28475 (OHS82_28475) - 6526727..6527032 (-) 306 WP_057574869.1 hypothetical protein -
  OHS82_RS28495 (OHS82_28495) - 6527722..6529308 (-) 1587 WP_328434789.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62543.59 Da        Isoelectric Point: 5.5627

>NTDB_id=649564 OHS82_RS28465 WP_057574792.1 6523271..6525004(-) (rcrP) [Streptomyces sp. NBC_00425]
MLIRLLRTYLRPYRKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVEGDTGYILTFGGVMIAVSLAQVVCNIGAVYYGA
RTAAALGRDVRAAVFDRVQSFSARELGQFGAPSLITRTTNDVQQIQMLALMTFTLMASAPIMCVGGIVLALGLDVPLSAV
LVAVVPTLGICVTLIVRRLRPLFRSMQVKLDTVNRVLREQITGNRVIRAFVRDEYEQQRFREANADLTGISLKTGNLLAL
MFPVVMTTVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMQVPRAEVCAERIQEVLDTSSSVVP
PVAPVTELRRHGHLEIRGAGFRYPGAEEPVLKAVELVARPGETTAVIGSTGSGKSTLLGLVPRLFDATEGEVLVDGVAVD
EVDPVLLARTVGLVPQKPYLFAGTVASNLRYGNPDATDEELWHALEVAQAKDFVSKLENGLDSPVAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAEATVVIVAQRVATIRDADRIIVLDEGRVVGTGTHRELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=649564 OHS82_RS28465 WP_057574792.1 6523271..6525004(-) (rcrP) [Streptomyces sp. NBC_00425]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAGGAAACCCATCGCTCTTCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACCCTGAACGCGCACATCATCGACAACGGCGTCGTCGAGGGAGACACCGGTTACA
TCCTGACGTTCGGCGGCGTGATGATCGCCGTGTCGCTGGCGCAGGTCGTGTGCAACATCGGCGCCGTGTACTACGGCGCC
AGGACCGCGGCCGCGCTCGGCCGGGACGTGCGGGCGGCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCCCGGGAGCTCGG
CCAGTTCGGCGCGCCGTCGCTGATCACCCGGACGACCAACGACGTCCAGCAGATCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGCGTCGGCGCCCATCATGTGCGTGGGCGGCATCGTACTGGCGCTCGGCCTGGACGTGCCGCTGTCCGCGGTG
CTCGTCGCGGTCGTGCCGACCCTGGGCATCTGCGTGACGCTGATCGTGCGCCGGCTGCGGCCGCTGTTCCGGTCGATGCA
GGTGAAGCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCGTTCGTGCGGGACG
AGTACGAGCAGCAGCGGTTCCGGGAGGCCAACGCCGATCTCACCGGCATCTCGCTGAAGACCGGCAACCTGTTGGCGCTG
ATGTTCCCGGTGGTCATGACCACGGTGAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCGCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGACCTGACCGCGTTCCTCGCCTACCTCATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGCAGGTGCCGCGTGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTGCTGGACACCTCGTCGTCCGTGGTTCCG
CCGGTGGCTCCCGTCACCGAACTGCGGCGGCACGGGCATCTGGAGATCCGGGGCGCCGGGTTCCGCTATCCCGGCGCCGA
GGAGCCCGTCCTGAAGGCCGTCGAGCTGGTGGCCCGCCCCGGTGAGACGACGGCCGTGATCGGCTCGACCGGCAGCGGCA
AGTCCACGCTCCTCGGGCTGGTGCCACGGCTGTTCGACGCCACCGAGGGGGAGGTGCTCGTCGACGGGGTGGCCGTGGAC
GAGGTCGACCCGGTGCTGCTGGCGAGGACCGTCGGTCTCGTGCCGCAGAAGCCGTACCTGTTCGCGGGCACGGTCGCCAG
CAACCTGCGGTACGGCAATCCGGACGCCACCGACGAGGAACTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGACTTCG
TCAGCAAGCTGGAGAACGGCCTCGACTCCCCCGTCGCGCAGGGCGGCACCAACGTCTCCGGCGGTCAGCGGCAGCGGCTG
GCGATCGCCCGCACGCTCGTGCAGCGGCCGGAGATCTATCTGTTCGACGACTCCTTCTCGGCCCTCGACTACGCCACCGA
CGCGGCGCTGCGGGCGGCGCTCGGGCGGGAGACCGCCGAGGCCACCGTGGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GCGACGCCGACCGGATCATCGTCCTCGACGAGGGCCGGGTCGTCGGCACGGGAACCCACCGCGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.724

100

0.399