Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHS82_RS28460 Genome accession   NZ_CP107928
Coordinates   6521343..6523271 (-) Length   642 a.a.
NCBI ID   WP_057574791.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00425     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6516343..6528271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS82_RS28445 (OHS82_28445) - 6516711..6517976 (+) 1266 WP_057574788.1 FAD-dependent oxidoreductase -
  OHS82_RS28450 (OHS82_28450) dnaG 6518006..6519907 (+) 1902 WP_057574789.1 DNA primase -
  OHS82_RS28455 (OHS82_28455) - 6519962..6521248 (+) 1287 WP_079040936.1 RNA polymerase sigma factor -
  OHS82_RS28460 (OHS82_28460) rcrQ 6521343..6523271 (-) 1929 WP_057574791.1 ABC transporter ATP-binding protein Regulator
  OHS82_RS28465 (OHS82_28465) rcrP 6523271..6525004 (-) 1734 WP_057574792.1 ABC transporter ATP-binding protein Regulator
  OHS82_RS28470 (OHS82_28470) - 6525168..6526622 (-) 1455 WP_057574793.1 FGGY family carbohydrate kinase -
  OHS82_RS28475 (OHS82_28475) - 6526727..6527032 (-) 306 WP_057574869.1 hypothetical protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69473.87 Da        Isoelectric Point: 5.9552

>NTDB_id=649563 OHS82_RS28460 WP_057574791.1 6521343..6523271(-) (rcrQ) [Streptomyces sp. NBC_00425]
MAGPMGRMMAGGGPENRSLDFKVSGRRLLARFRPERLTLCLMLFCVVLSVGLNVVGPKILGKATDLVFAGIVGREMPAGA
TKEQALDAIRERGDSGVADMLRSTDFTPGKGIDFGSVGEVLLVAVGVFLVAGLLMAAATRLVNRTVNRTMFRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAMMFWVSWLLALVALVTVPLSAVVATRVGK
RSQPHFVQQWRSTGKLNAHIEEMYTGHNLVKVFGRQQQSAEQFAEQNDALYEAGFRAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFEILDAAEQEADPVAAERPEELRGRVALE
GVSFRYDPQKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSGGRITLDGVDIARMSRAELRAGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPTILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHGDLLSADGAYARLYKAQFAEAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=649563 OHS82_RS28460 WP_057574791.1 6521343..6523271(-) (rcrQ) [Streptomyces sp. NBC_00425]
ATGGCCGGGCCCATGGGGCGCATGATGGCCGGCGGAGGTCCCGAGAACCGCTCGCTGGACTTCAAGGTGTCCGGCAGGCG
GTTGCTCGCCCGGTTCCGGCCGGAACGGCTGACGCTCTGCCTGATGCTGTTCTGCGTCGTGCTCAGCGTCGGCCTCAACG
TGGTGGGACCGAAGATCCTCGGCAAGGCCACCGACCTCGTCTTCGCGGGCATCGTCGGCCGGGAGATGCCGGCCGGGGCG
ACCAAGGAGCAGGCCCTCGACGCGATTCGGGAGCGCGGTGACAGCGGTGTCGCCGACATGCTCAGAAGCACCGACTTCAC
GCCCGGCAAGGGCATCGACTTCGGCTCGGTCGGCGAAGTGCTGCTGGTCGCGGTCGGGGTGTTCCTGGTCGCGGGGCTGC
TGATGGCGGCGGCGACGCGCCTGGTCAACAGGACCGTCAACCGCACGATGTTCCGGATGCGCGAGGACGTGCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGCGAGGTGCTGTCCCGCGCGACCAACGACATCGACAA
CATCGGACAGACGCTCCAGCAGTCGATGGGGCAGCTCATCAACTCGCTGCTGACGATCATCGGCGTGCTGGCGATGATGT
TCTGGGTGTCGTGGCTGCTGGCGCTGGTGGCCCTCGTCACCGTGCCGCTGTCGGCGGTCGTCGCCACCCGGGTGGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCCACCGGCAAGCTCAACGCGCACATCGAGGAGATGTACACCGGTCA
CAACCTGGTGAAGGTGTTCGGCCGTCAGCAGCAGTCGGCCGAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCG
GGTTCAGGGCGCAGTTCAACAGCGGTGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTCAACTACGTGCTGGTGGCG
GTGGTCGGCGGGCTGCGCGTCGCGTCGGGCTCGCTGTCCATCGGCGACGTGCAGGCGTTCATCCAGTACTCCCGCCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCCTCGGCCGAGCGGGTCTTCGAGA
TCCTGGACGCGGCGGAGCAGGAGGCGGACCCGGTGGCCGCCGAGCGGCCCGAGGAGCTGCGCGGACGGGTGGCGCTGGAG
GGCGTCTCCTTCCGCTACGACCCGCAGAAGCCGCTGATCGAGGACCTGTCGCTGACGGTGGAGCCCGGCCACACGGTCGC
CATCGTCGGTCCGACGGGCGCCGGCAAGACGACTCTGGTGAACCTGCTCATGCGGTTCTACGACGTCTCCGGCGGACGCA
TCACCCTCGACGGCGTCGACATAGCGCGGATGTCCCGTGCCGAGCTGCGCGCGGGGATCGGCATGGTGCTGCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGCGCGTCGCGGGAGGTCACCCGGGGCGAGATCGAAGAGGC
GGCGCGGGCCGCGCACGCCGACCGGTTCGTCCGCACGCTGCCCGACGGCTACGACACCGTGATCGACGACGAGGGCAGCG
GGGTCAGCGCGGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGACGATCCTGGTGCTCGACGAG
GCCACCAGCTCCGTCGACACCCGCACCGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCCCACGGCCGCACGTCGTT
CGTCATCGCGCACCGGCTGTCGACCATCCGGGACGCCGACACGATCCTGGTGATGGAGAACGGCTCGATCGTGGAGCAGG
GCGCGCACGGCGACCTGCTGTCGGCGGACGGGGCCTACGCCCGGCTGTACAAGGCGCAGTTCGCGGAGGCGGTGGCGGAG
GTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(39-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.853

84.891

0.372