Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHS82_RS12720 Genome accession   NZ_CP107928
Coordinates   3045521..3046300 (+) Length   259 a.a.
NCBI ID   WP_057575372.1    Uniprot ID   A0ABQ3SAE0
Organism   Streptomyces sp. NBC_00425     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3040521..3051300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS82_RS12705 (OHS82_12715) - 3040551..3041084 (+) 534 WP_057575376.1 TerD family protein -
  OHS82_RS12710 (OHS82_12720) - 3041179..3044079 (-) 2901 WP_057575374.1 vitamin B12-dependent ribonucleotide reductase -
  OHS82_RS12715 (OHS82_12725) nrdR 3044244..3044831 (-) 588 WP_057576192.1 transcriptional regulator NrdR -
  OHS82_RS12720 (OHS82_12730) dinR/lexA 3045521..3046300 (+) 780 WP_057575372.1 transcriptional repressor LexA Regulator
  OHS82_RS12725 (OHS82_12735) - 3046438..3048420 (-) 1983 WP_057575369.1 ATP-dependent DNA helicase -
  OHS82_RS12730 (OHS82_12740) - 3048679..3049296 (-) 618 WP_328433885.1 GNAT family N-acetyltransferase -
  OHS82_RS12735 (OHS82_12745) - 3049378..3051258 (-) 1881 WP_328433886.1 IucA/IucC family protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28035.80 Da        Isoelectric Point: 7.0666

>NTDB_id=649523 OHS82_RS12720 WP_057575372.1 3045521..3046300(+) (dinR/lexA) [Streptomyces sp. NBC_00425]
MTTTADSATITAQDRSQGRLEPVHAMNEAMNPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQAASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=649523 OHS82_RS12720 WP_057575372.1 3045521..3046300(+) (dinR/lexA) [Streptomyces sp. NBC_00425]
GTGACCACCACCGCAGACAGTGCCACCATCACCGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCATGAATCCCGAGGGACACAAGCGTTCCCTGCCGGGCCGACCTCCAGGCATCCGCGCGGACAGTTCGGGACTCA
CGGACCGGCAGCGACGGGTGATCGAGGTCATCAGGGATTCCGTCCAACGGCGCGGCTACCCGCCGTCGATGCGGGAGATC
GGCCAGGCGGTCGGCTTGTCCAGCACCTCCTCGGTCGCACACCAGCTGATGGCACTGGAGCGCAAGGGCTTCCTGCGCCG
TGACCCGCACCGCCCGCGCGCGTACGAGGTGCGGGGCTCCGACCAGGCGGCCTCCGTGCAGCCCACGGACACCGCGGGCA
AGCCCGCCGCGTCGTACGTCCCGCTCGTCGGGCGTATCGCCGCCGGCGGTCCGATCCTCGCCGAGGAGTCGGTGGAGGAC
GTCTTCCCGCTCCCGAGGCAGCTGGTCGGCGACGGCGAGCTGTTCGTGCTGAAGGTCGTCGGCGACTCGATGATCGAGGC
CGCTATCTGCGACGGCGACTGGGTCACCGTGCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCGTGGCCGCGATGCTGG
ACGGCGAGGCCACCGTGAAGCGCTTCAAGCGCGAGGACGGCCATGTGTGGCTGCTCCCCCACAACGCCGCCTACGAGCCG
ATCCCCGGCGACGACGCGACGATCCTCGGCAAGGTGGTGGCCGTACTCCGCCGCGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375