Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   OHS82_RS08745 Genome accession   NZ_CP107928
Coordinates   2121673..2123748 (+) Length   691 a.a.
NCBI ID   WP_057582815.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00425     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2116673..2128748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS82_RS08720 (OHS82_08735) - 2117067..2117492 (+) 426 WP_057582836.1 MarR family transcriptional regulator -
  OHS82_RS08725 (OHS82_08740) - 2117560..2118339 (+) 780 WP_328433629.1 IclR family transcriptional regulator -
  OHS82_RS08730 (OHS82_08745) - 2118437..2118967 (+) 531 WP_328433630.1 GNAT family N-acetyltransferase -
  OHS82_RS08735 (OHS82_08750) - 2119111..2120505 (+) 1395 WP_328433631.1 glycoside hydrolase family 16 protein -
  OHS82_RS08740 (OHS82_08755) - 2120597..2121505 (-) 909 WP_057582814.1 AraC family transcriptional regulator -
  OHS82_RS08745 (OHS82_08760) recP/tkt 2121673..2123748 (+) 2076 WP_057582815.1 transketolase Machinery gene
  OHS82_RS08750 (OHS82_08765) - 2123900..2124253 (+) 354 Protein_1746 transaldolase -
  OHS82_RS08755 (OHS82_08770) zwf 2124250..2125794 (+) 1545 WP_057582820.1 glucose-6-phosphate dehydrogenase -
  OHS82_RS08760 (OHS82_08775) opcA 2125791..2126726 (+) 936 WP_057582822.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  OHS82_RS08765 (OHS82_08780) pgi 2126719..2128359 (+) 1641 WP_328433632.1 glucose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 73642.16 Da        Isoelectric Point: 5.2789

>NTDB_id=649517 OHS82_RS08745 WP_057582815.1 2121673..2123748(+) (recP/tkt) [Streptomyces sp. NBC_00425]
MSTQTPNDFTWTDTDRRAVDTARLLAADAVQQAGNGHPGTAMSLAPVAYTIFQKVMRHDPADPEWTGRDRFVLSPGHTSL
TLYTQLFLAGYELELADLKRFRTHGSKTPGHPEYGHTAGVETTTGPLGQGVANAVGMAMAARYERGLFDPDAPQGESPFD
HTIWGIVSDGDLEEGVSAEASSLAGHQKLGNLVLVYDDNHISIEGDTATAFSEDVLGRYAAYGWHTQRVEPAGDGDVDVP
ALHQALRAAQAETGRPSIISLRTIIAWPAPNARNTEAAHGSALGADEVAATKRVLGFDPEKTFEAEDKVLAHTRTALDRG
AQAHAAWDRRLAGWRAANPARAALFDRVVAGRLPDGWEDALPVFEPGGSVATRAASGKVLQALGPVLPELWGGSADLAGS
NNTTIDTTSSFLPEGNPLPEASPYGRTVHFGIREFAMAATMNGIALHGDTRVYGGTFLVFSDYMRNAVRMSALMQLPVTY
VWTHDSVGLGEDGPTHQPVEHLASLRAVPGLNVVRPADANETAIAWAEILRRHATRPAPHGLALSRQGLPTYAPNPDAAK
GGYVLRDSASDVPDVVLIATGSEVRLAVDAREALRAEGIDARVVSMPSVEWFEEQPRAYRDQVLPPSVRARVAVEAGIGL
TWHRFVGDAGRIVSLEHFGASADAGTLFAEYGFTAENVAAAARESVAAARG

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=649517 OHS82_RS08745 WP_057582815.1 2121673..2123748(+) (recP/tkt) [Streptomyces sp. NBC_00425]
ATGAGCACGCAGACACCGAACGATTTCACCTGGACCGACACCGACCGGCGTGCGGTCGACACCGCCCGCCTTCTGGCGGC
TGACGCCGTACAGCAGGCGGGCAACGGGCATCCCGGCACCGCCATGAGTCTGGCTCCCGTCGCCTACACGATCTTTCAGA
AGGTGATGCGGCACGATCCCGCCGATCCGGAGTGGACCGGGCGCGACCGCTTCGTGCTGTCCCCGGGCCACACCTCGCTC
ACCCTCTACACCCAGCTCTTCCTCGCCGGGTACGAGCTGGAGCTGGCGGACCTGAAGCGCTTCCGCACGCACGGCTCGAA
GACGCCCGGACACCCCGAGTACGGGCACACCGCCGGTGTCGAGACGACCACCGGACCCCTCGGCCAGGGCGTCGCCAACG
CCGTCGGCATGGCGATGGCCGCGCGCTACGAGCGCGGTCTGTTCGACCCCGACGCCCCGCAGGGCGAGTCGCCCTTCGAC
CACACGATCTGGGGCATCGTCTCCGACGGCGACCTGGAGGAGGGCGTCTCTGCGGAGGCCTCCTCGCTGGCGGGACACCA
GAAGCTCGGCAACCTCGTCCTCGTCTACGACGACAACCACATCTCCATCGAGGGCGACACCGCCACCGCGTTCTCCGAGG
ACGTGCTGGGGCGGTACGCGGCCTACGGCTGGCACACCCAGCGCGTCGAGCCGGCCGGGGACGGCGACGTCGACGTCCCC
GCCCTCCACCAGGCGCTGCGGGCGGCGCAGGCCGAGACCGGCCGCCCGTCGATCATCTCGCTGCGCACGATCATCGCCTG
GCCCGCGCCGAACGCGCGCAACACCGAGGCCGCGCACGGCTCGGCGCTCGGCGCGGACGAGGTCGCCGCCACCAAGCGCG
TCCTGGGCTTCGACCCGGAGAAGACCTTCGAGGCCGAGGACAAGGTCCTCGCGCACACCCGCACCGCCCTCGACCGGGGC
GCGCAGGCCCACGCCGCCTGGGACAGGCGGCTCGCCGGGTGGCGGGCCGCGAACCCCGCGCGGGCGGCCCTGTTCGACCG
GGTCGTCGCGGGCCGGCTCCCCGACGGCTGGGAGGACGCGCTGCCGGTGTTCGAACCCGGCGGGTCGGTCGCCACCCGCG
CCGCGTCCGGCAAGGTGCTGCAGGCGCTCGGCCCGGTGCTGCCTGAGCTGTGGGGCGGCTCCGCCGACCTCGCCGGCTCC
AACAACACCACCATCGACACGACGTCGTCGTTCCTGCCCGAGGGCAACCCGCTGCCCGAGGCGAGCCCGTACGGCCGCAC
GGTCCACTTCGGCATCCGCGAGTTCGCGATGGCGGCGACGATGAACGGCATCGCGCTGCACGGCGACACCCGCGTCTACG
GCGGCACGTTCCTCGTGTTCTCCGACTACATGCGCAACGCCGTCCGCATGTCGGCGCTGATGCAGCTGCCGGTGACCTAC
GTGTGGACGCACGACTCCGTCGGCCTCGGCGAGGACGGCCCCACCCACCAGCCGGTCGAGCACCTCGCGTCGCTGCGCGC
CGTCCCCGGCCTGAACGTGGTCCGCCCGGCCGACGCCAACGAGACCGCGATCGCCTGGGCCGAGATCCTGCGGCGGCACG
CCACCCGCCCCGCCCCGCACGGACTCGCCCTCTCCCGCCAGGGCCTGCCGACGTACGCGCCGAACCCGGACGCGGCGAAG
GGCGGGTACGTGCTCCGGGACTCCGCGTCGGACGTCCCCGACGTGGTGCTCATCGCCACCGGCTCCGAGGTGCGGCTGGC
CGTCGACGCGCGCGAGGCGCTGCGGGCCGAGGGGATCGACGCCCGGGTGGTGTCGATGCCGTCCGTGGAGTGGTTCGAGG
AGCAGCCGCGGGCCTACCGCGACCAGGTGCTTCCACCGTCCGTGCGGGCCCGGGTCGCCGTCGAGGCGGGCATCGGCCTG
ACCTGGCACCGGTTCGTGGGCGACGCGGGGCGCATCGTCTCCCTCGAGCACTTCGGCGCCTCCGCCGACGCCGGGACCCT
GTTCGCCGAGTACGGCTTCACCGCCGAGAACGTCGCCGCCGCGGCCCGGGAATCCGTGGCCGCCGCCCGCGGTTGA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(370-550)

Transketolase, C-terminal domain (Transketolase_C)

(572-678)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(15-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

45.833

97.25

0.446