Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   L2Z38_RS02235 Genome accession   NZ_CP091339
Coordinates   456316..457200 (+) Length   294 a.a.
NCBI ID   WP_215741182.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB229-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 451316..462200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z38_RS02210 (L2Z38_02210) - 451714..452961 (-) 1248 WP_000893466.1 YihY family inner membrane protein -
  L2Z38_RS02215 (L2Z38_02215) wrbA 453249..453842 (+) 594 WP_001183358.1 NAD(P)H:quinone oxidoreductase -
  L2Z38_RS02220 (L2Z38_02220) - 453895..454470 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  L2Z38_RS02225 (L2Z38_02225) - 454543..455256 (-) 714 WP_000201547.1 DUF3108 domain-containing protein -
  L2Z38_RS02230 (L2Z38_02230) - 455414..456085 (-) 672 WP_001193957.1 hypothetical protein -
  L2Z38_RS02235 (L2Z38_02235) tonB2 456316..457200 (+) 885 WP_215741182.1 energy transducer TonB Machinery gene
  L2Z38_RS02240 (L2Z38_02240) ybeY 457290..457766 (-) 477 WP_000703572.1 rRNA maturation RNase YbeY -
  L2Z38_RS02245 (L2Z38_02245) - 457776..458864 (-) 1089 WP_000122983.1 PhoH family protein -
  L2Z38_RS02250 (L2Z38_02250) miaB 458902..460353 (-) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33637.46 Da        Isoelectric Point: 9.0935

>NTDB_id=649505 L2Z38_RS02235 WP_215741182.1 456316..457200(+) (tonB2) [Acinetobacter baumannii strain AB229-VUB]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPAPMPSDASTGEAQQETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=649505 L2Z38_RS02235 WP_215741182.1 456316..457200(+) (tonB2) [Acinetobacter baumannii strain AB229-VUB]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTGATCAAGCATGCAGACTTTTTAGCCCAAGCTGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCAAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
AAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCAGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.66

100

0.997