Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG389_RS12250 Genome accession   NZ_CP107924
Coordinates   2657650..2659575 (+) Length   641 a.a.
NCBI ID   WP_328298507.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00435     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2652650..2664575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG389_RS12235 (OG389_12250) - 2653854..2654162 (+) 309 WP_328298504.1 YtxH domain-containing protein -
  OG389_RS12240 (OG389_12255) - 2654327..2655799 (+) 1473 WP_328298505.1 FGGY family carbohydrate kinase -
  OG389_RS12245 (OG389_12260) rcrP 2655920..2657653 (+) 1734 WP_328298506.1 ABC transporter ATP-binding protein Regulator
  OG389_RS12250 (OG389_12265) rcrQ 2657650..2659575 (+) 1926 WP_328298507.1 ABC transporter ATP-binding protein Regulator
  OG389_RS12255 (OG389_12270) - 2659657..2660751 (-) 1095 WP_328298508.1 RNA polymerase sigma factor -
  OG389_RS12260 (OG389_12275) - 2660927..2661511 (+) 585 WP_328298509.1 hypothetical protein -
  OG389_RS12265 (OG389_12280) - 2661508..2662485 (+) 978 WP_328298510.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 68844.50 Da        Isoelectric Point: 6.2132

>NTDB_id=649450 OG389_RS12250 WP_328298507.1 2657650..2659575(+) (rcrQ) [Streptomyces sp. NBC_00435]
MSSPGGRMMMGPPTTRSMDFKGSGKRLLRALARDRAKLWGMVLAVVGSVAASVTGPKILGKATDLVFAGIVGREMPKGIT
KEQALDGLRAKGQGGMADMLSGTAFTPGKGIDFGAVGVVALWALGVFTLAGLLMLVATRLSNHIMNGTVYRMREELQAKL
SRLPLSYFDQQKRGEVLSRATNDIDNVGQTLQQTMGQLLNSLLTIIGVLAMMFWISPLLALVALVTIPVSGFVAAKIGKK
SQPQFVAQWKSTGALNAHVEEMYSGHTLVKVFGRQKESAELFAEQNEALYRASFKAQLVSGVMQPVMLFISNINYVLVAV
VGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDAAEQEPDAEVPERPEALRGQVTFDK
VAFRYEPDKPLIENLSLTVDPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTREELRGGIGMVLQDTW
LFGGTIAENIAYGASREVTRAEVEEAARAAHADRFIRTLPEGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADLILVMESGSIVEQGTHEELLRSGGAYARLYAAQFAQAVAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=649450 OG389_RS12250 WP_328298507.1 2657650..2659575(+) (rcrQ) [Streptomyces sp. NBC_00435]
GTGAGCAGTCCCGGAGGACGGATGATGATGGGACCGCCGACGACGCGGTCCATGGACTTCAAGGGCTCGGGCAAGCGGCT
GCTGCGCGCGCTGGCGCGCGACCGGGCCAAGCTGTGGGGCATGGTCCTCGCGGTCGTCGGCAGCGTCGCCGCGTCGGTGA
CCGGCCCGAAGATCCTCGGCAAGGCCACCGACCTCGTGTTCGCGGGGATCGTCGGCCGGGAGATGCCGAAGGGGATCACC
AAGGAGCAGGCCCTGGACGGGCTGCGCGCCAAGGGCCAGGGCGGGATGGCGGACATGCTGTCCGGGACCGCCTTCACCCC
GGGCAAGGGCATCGACTTCGGCGCGGTCGGAGTGGTGGCCCTGTGGGCGCTCGGCGTCTTCACGCTCGCCGGTCTGCTGA
TGCTGGTCGCCACGCGGCTGTCGAACCACATCATGAACGGCACCGTGTACCGGATGCGCGAGGAGCTGCAGGCCAAGCTC
TCGCGGCTGCCGCTGTCGTACTTCGACCAGCAGAAGCGCGGCGAGGTGCTGAGCCGGGCCACGAACGACATCGACAACGT
CGGGCAGACGCTCCAGCAGACGATGGGCCAGCTGCTCAACTCGCTCCTGACGATCATCGGCGTGCTGGCGATGATGTTCT
GGATCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTCACCATCCCGGTCTCGGGGTTCGTGGCCGCGAAGATCGGCAAGAAG
TCGCAGCCGCAGTTCGTGGCGCAGTGGAAGTCCACGGGCGCCCTGAACGCGCACGTCGAGGAGATGTACTCGGGCCACAC
GCTGGTCAAGGTCTTCGGCCGGCAGAAGGAGTCCGCGGAGCTCTTCGCCGAGCAGAACGAGGCGCTGTACCGGGCTTCGT
TCAAGGCGCAGCTGGTCAGCGGCGTCATGCAGCCGGTGATGCTGTTCATCTCGAACATCAACTACGTGCTCGTCGCGGTC
GTCGGCGGTCTGCGGGTGGCCTCGGGCACCCTGTCGATCGGTGATGTCCAGGCCTTCATCCAGTACTCGCGCCAGTTCTC
GATGCCGCTGACGCAGGTCGCCTCCATGGCGAACCTGGTGCAGTCCGGCGTCGCCTCCGCGGAGCGGGTCTACGAGCTGC
TGGACGCGGCGGAGCAGGAGCCGGACGCCGAGGTCCCGGAGCGTCCGGAGGCACTGCGCGGGCAGGTCACCTTCGACAAG
GTCGCCTTCCGCTACGAGCCGGACAAGCCGCTGATCGAGAACCTCTCGCTCACGGTCGACCCCGGCCAGACGGTCGCGAT
CGTCGGCCCGACCGGCGCCGGCAAGACCACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTCACGGGCGGGGAGATCG
CCCTCGACGGCGTGGACATCGCGAAGATGACCCGCGAGGAACTGCGCGGCGGCATCGGCATGGTGCTCCAGGACACCTGG
CTGTTCGGCGGCACCATCGCGGAGAACATCGCCTACGGCGCTTCGCGCGAGGTGACGCGCGCCGAGGTCGAGGAGGCCGC
GCGGGCGGCCCACGCCGACCGGTTCATCCGCACCCTGCCCGAGGGCTACGACACGGTGCTCGACGACGAGGGCGCGGGCG
TCAGCGCCGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGATCCGGTGATCCTGGTGCTCGACGAGGCC
ACGAGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTCGCGCACGGCCGTACGTCCTTCGT
GATCGCGCACCGGCTGTCCACGATCCGCGACGCGGACCTGATCCTGGTGATGGAGAGCGGCTCCATCGTGGAGCAGGGCA
CGCACGAGGAGCTGCTGCGCTCGGGCGGCGCCTACGCGCGCCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCCGAGGTC
GACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(57-350)

ABC transporter (ABC_tran)

(413-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

45.472

82.683

0.376