Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG389_RS12245 Genome accession   NZ_CP107924
Coordinates   2655920..2657653 (+) Length   577 a.a.
NCBI ID   WP_328298506.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00435     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2650920..2662653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG389_RS12205 (OG389_12220) - 2651137..2651733 (+) 597 WP_328298501.1 hypothetical protein -
  OG389_RS12210 (OG389_12225) - 2651730..2652176 (+) 447 WP_328298502.1 hypothetical protein -
  OG389_RS12215 (OG389_12230) - 2652364..2653173 (+) 810 WP_328298503.1 SigB/SigF/SigG family RNA polymerase sigma factor -
  OG389_RS12235 (OG389_12250) - 2653854..2654162 (+) 309 WP_328298504.1 YtxH domain-containing protein -
  OG389_RS12240 (OG389_12255) - 2654327..2655799 (+) 1473 WP_328298505.1 FGGY family carbohydrate kinase -
  OG389_RS12245 (OG389_12260) rcrP 2655920..2657653 (+) 1734 WP_328298506.1 ABC transporter ATP-binding protein Regulator
  OG389_RS12250 (OG389_12265) rcrQ 2657650..2659575 (+) 1926 WP_328298507.1 ABC transporter ATP-binding protein Regulator
  OG389_RS12255 (OG389_12270) - 2659657..2660751 (-) 1095 WP_328298508.1 RNA polymerase sigma factor -
  OG389_RS12260 (OG389_12275) - 2660927..2661511 (+) 585 WP_328298509.1 hypothetical protein -
  OG389_RS12265 (OG389_12280) - 2661508..2662485 (+) 978 WP_328298510.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62684.77 Da        Isoelectric Point: 6.3252

>NTDB_id=649449 OG389_RS12245 WP_328298506.1 2655920..2657653(+) (rcrP) [Streptomyces sp. NBC_00435]
MLIRLMRTHLGPYRKPIALLVLLQLLQTSASLYLPTLNADIIDHGVVNGDTGYILRFGALMLGVSLVQLVCNAGAVYYGA
RTAAAFGRDVRAAVFDRVQSFSARELGHFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCVGGIFMALSLDVKLSGV
LLAVVPVLGLSVGAIVLRTRPLFRKMQTRLDTVNRVLREQITGNRVIRAFIRDDYEKNRFREANADLTGVSLAAGKLLAL
MFPTVIVVVNISSVAVIWFGAMRIDSGGMEIGQLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLDTDSSVVP
PTDPVRKLLHHGRLELRGADFRYPGAEAPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGEDVR
RLDPDLLARTVGMVPQKPYLFSGTVATNLRYGRPDATDEELWHALEVAQAKGFVSELEGGLDAPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRSALARETEDATVVIVAQRVSTIRDADRIIVLDEGQVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=649449 OG389_RS12245 WP_328298506.1 2655920..2657653(+) (rcrP) [Streptomyces sp. NBC_00435]
GTGCTCATACGACTCATGCGGACCCACCTGGGTCCGTACCGGAAACCGATCGCCCTGCTGGTGCTGCTGCAGCTGCTGCA
GACCAGCGCGAGCCTCTACCTGCCCACGCTGAACGCGGACATCATCGACCACGGTGTCGTCAACGGTGACACCGGCTACA
TCCTGCGCTTCGGCGCGCTGATGCTCGGCGTCTCGCTCGTGCAGCTCGTCTGCAACGCGGGCGCCGTCTACTACGGCGCC
CGTACCGCCGCGGCCTTCGGCCGCGATGTCCGGGCCGCCGTCTTCGACCGCGTCCAGAGCTTCTCCGCGCGTGAGCTCGG
CCACTTCGGCGCCCCGTCGCTGATCACCCGTACGACGAACGACGTGCAGCAGATCCAGATGCTCGTACTGATGACCTTCA
CCCTGATGGTCTCGGCTCCGATCATGTGCGTCGGCGGCATCTTCATGGCGCTCTCGCTGGACGTGAAGCTGTCGGGCGTG
CTGCTCGCCGTGGTTCCCGTCCTCGGCCTGTCGGTCGGCGCGATCGTGCTGCGGACGCGGCCGCTGTTCCGGAAGATGCA
GACGCGTCTGGACACGGTCAACCGGGTCCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCATCCGCGACG
ACTACGAGAAGAACCGCTTCCGCGAGGCCAATGCCGACCTCACGGGCGTCTCGCTGGCGGCCGGCAAGCTGCTCGCGCTG
ATGTTCCCGACCGTCATAGTGGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGCGCGATGCGCATCGACAGCGG
CGGCATGGAGATCGGCCAGCTGACGGCCTTCCTGGCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCGTCCAGGAGGTCCTGGACACCGACTCCAGCGTGGTCCCG
CCCACCGATCCGGTCCGCAAGCTCCTCCACCACGGCCGCCTCGAGCTGCGCGGCGCCGACTTCCGCTACCCGGGCGCCGA
GGCCCCCGTACTGCGCGGGGTCGACCTGGTGGCCCGCCCCGGGGAGACCACCGCGGTGATCGGTTCCACCGGCAGCGGCA
AGTCCACGCTGCTGGGCCTGGTCCCCCGGCTGTTCGACGCGACCGGCGGCGAGGTGCTCGTCGACGGCGAGGACGTGCGC
CGTCTCGACCCGGACCTGCTCGCCAGGACGGTCGGCATGGTCCCGCAGAAGCCGTACCTGTTCTCCGGGACGGTCGCCAC
CAACCTGCGCTACGGGCGCCCCGACGCCACCGACGAAGAGCTGTGGCACGCGCTGGAAGTGGCGCAGGCCAAGGGCTTCG
TGTCCGAGCTGGAGGGCGGGCTCGACGCCCCCATCTCCCAGGGCGGAACCAACGTCTCCGGCGGCCAGCGCCAGCGGCTC
GCGATCGCGCGCACGCTCGTGCAGCGCCCGGAGATCTACCTGTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCTCCGCGCTCGCCCGCGAGACCGAGGACGCGACCGTGGTCATCGTCGCCCAGCGGGTCTCCACGATCC
GCGACGCGGACCGGATCATCGTCCTCGACGAGGGGCAGGTGGTGGGCGAGGGGCGGCACCACGAGCTGATGGCCGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCGGCGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.761

100

0.404