Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   L2Z41_RS01000 Genome accession   NZ_CP091336
Coordinates   207951..208769 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain AB233-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 202951..213769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z41_RS00965 (L2Z41_00965) - 203534..203663 (-) 130 Protein_184 hypothetical protein -
  L2Z41_RS00970 (L2Z41_00970) rpoZ 203702..203980 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  L2Z41_RS00975 (L2Z41_00975) gmk 204053..204682 (-) 630 WP_000015937.1 guanylate kinase -
  L2Z41_RS00980 (L2Z41_00980) ispH 204805..205755 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L2Z41_RS00985 (L2Z41_00985) fimU 205925..206398 (+) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  L2Z41_RS00990 (L2Z41_00990) pilV 206392..206952 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  L2Z41_RS00995 (L2Z41_00995) pilW 206953..207954 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  L2Z41_RS01000 (L2Z41_01000) pilX 207951..208769 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  L2Z41_RS01005 (L2Z41_01005) pilY1 208781..212635 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  L2Z41_RS01010 (L2Z41_01010) pilY2 212648..213130 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  L2Z41_RS01015 (L2Z41_01015) pilE 213127..213552 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=649405 L2Z41_RS01000 WP_000149374.1 207951..208769(+) (pilX) [Acinetobacter baumannii strain AB233-VUB]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=649405 L2Z41_RS01000 WP_000149374.1 207951..208769(+) (pilX) [Acinetobacter baumannii strain AB233-VUB]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993