Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHB13_RS10425 Genome accession   NZ_CP107921
Coordinates   2344945..2346942 (+) Length   665 a.a.
NCBI ID   WP_328376877.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00440     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2339945..2351942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB13_RS10390 (OHB13_10400) - 2340074..2340241 (-) 168 Protein_2060 IS5/IS1182 family transposase -
  OHB13_RS10410 (OHB13_10420) - 2341231..2341530 (+) 300 WP_328376874.1 YtxH domain-containing protein -
  OHB13_RS10415 (OHB13_10425) - 2341560..2343041 (+) 1482 WP_328376875.1 FGGY family carbohydrate kinase -
  OHB13_RS10420 (OHB13_10430) rcrP 2343212..2344945 (+) 1734 WP_328376876.1 ABC transporter ATP-binding protein Regulator
  OHB13_RS10425 (OHB13_10435) rcrQ 2344945..2346942 (+) 1998 WP_328376877.1 ABC transporter ATP-binding protein Regulator
  OHB13_RS10430 (OHB13_10440) - 2347085..2348281 (-) 1197 WP_328380260.1 RNA polymerase sigma factor -
  OHB13_RS10435 (OHB13_10445) dnaG 2348485..2350389 (-) 1905 WP_328376878.1 DNA primase -
  OHB13_RS10440 (OHB13_10450) - 2350436..2351698 (-) 1263 WP_266857266.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 665 a.a.        Molecular weight: 71376.07 Da        Isoelectric Point: 5.4329

>NTDB_id=649376 OHB13_RS10425 WP_328376877.1 2344945..2346942(+) (rcrQ) [Streptomyces sp. NBC_00440]
MAGPGGRMMAGPTQKSMDFKGSGKRLLRQLAQDRAALFTMLLAVVGSVALSVVGPKILGRATDLIFAGIIGRQLPAGTTK
AQALKGLHARGQGAMADMLSGVDFTPGKGIDFTQVGEILLLALAAFACAGLLMLVTTRLAARIINEAMYRMREEIQAKLS
RLPLSYFDRAKRGEVLSRTTNDVDNIGQTMQQTMGQLMNSLLTIIGVLAMMFWISWILALVALVTVPLSVLVATRVGKRS
QPQFVQQWKVTGKLNAHIEEMYTGHALVKIFGRQEESAEAFREQNDALYEAGFKAQFNSGIMQPLMMFVSNLNYVLVAVI
GGLRVASGSLSIGDVQAFIQYSRQFSQPLTQVASMANLVQSGVASAERIFELLDAEEQTPDTDSSGTESIAGSDAVAGAV
SDAVPGARIADRPVAVRGNISLEKVSFRYEADKPLIDDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLD
GTDVARMTREELRSGIGMVLQDTWLFGGTIAENIAYGSSRAVTREEVEEAARAAHADRFIRTLPEGYDTVIDDEGTGVSA
GEKQLITIARAFLSDPVILVLDEATSSVDTRTEVLIQQAMARLSHGRTSFVIAHRLSTIRDADVILVMENGAIVEQGSHE
ELLAAGGAYARLYAAQFAQAVVEVD

Nucleotide


Download         Length: 1998 bp        

>NTDB_id=649376 OHB13_RS10425 WP_328376877.1 2344945..2346942(+) (rcrQ) [Streptomyces sp. NBC_00440]
ATGGCCGGTCCTGGTGGACGCATGATGGCAGGACCGACCCAGAAGTCCATGGACTTCAAGGGATCGGGCAAGCGGCTGCT
GCGGCAGCTGGCGCAGGACCGTGCCGCTCTGTTCACGATGCTGCTGGCCGTCGTCGGCAGCGTCGCGCTCTCGGTCGTCG
GGCCGAAGATCCTCGGCCGGGCGACCGACCTGATCTTCGCCGGGATCATCGGCCGGCAGCTGCCCGCGGGCACGACCAAG
GCGCAGGCCTTGAAGGGCCTGCACGCCAGGGGTCAGGGCGCGATGGCCGACATGCTCTCCGGTGTGGACTTCACGCCGGG
CAAGGGCATCGACTTCACCCAGGTGGGAGAGATCCTGCTGCTCGCGCTGGCGGCCTTCGCCTGCGCGGGTCTGCTGATGC
TCGTCACCACCCGGCTCGCGGCCCGGATCATCAATGAGGCCATGTACCGGATGCGCGAGGAGATCCAGGCGAAGCTCTCG
CGGCTGCCGCTGTCGTACTTCGACAGGGCGAAGCGCGGTGAGGTGCTCAGCCGGACGACCAACGACGTCGACAACATCGG
CCAGACGATGCAGCAGACCATGGGCCAGCTCATGAACTCGCTGCTCACCATCATCGGCGTACTGGCGATGATGTTCTGGA
TCTCCTGGATCCTGGCGCTGGTCGCGCTGGTCACCGTGCCGCTCTCGGTGCTGGTGGCCACGCGCGTCGGCAAGCGGTCC
CAGCCGCAGTTCGTGCAGCAGTGGAAGGTCACCGGCAAGCTCAACGCCCATATCGAGGAGATGTACACCGGGCACGCCCT
GGTCAAGATCTTCGGGCGGCAGGAGGAGTCGGCCGAGGCCTTCCGCGAGCAGAACGACGCGCTGTACGAGGCGGGGTTCA
AGGCCCAGTTCAACAGCGGCATCATGCAGCCGCTGATGATGTTCGTCTCCAACCTCAACTACGTGCTGGTGGCGGTCATC
GGCGGGCTGCGGGTCGCTTCCGGGTCGCTGTCGATCGGTGATGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTCGCA
GCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGTGTGGCGTCCGCCGAGCGGATCTTCGAGCTGCTCG
ACGCGGAGGAGCAGACGCCCGACACGGACTCCTCCGGGACGGAATCCATTGCGGGATCCGACGCGGTAGCGGGCGCGGTG
TCCGACGCGGTGCCCGGTGCCCGTATTGCCGACCGTCCGGTGGCGGTGCGCGGCAACATCTCGCTGGAGAAGGTCTCGTT
CCGGTACGAGGCCGACAAGCCGCTCATCGACGATCTGTCGCTCTCGGTCGAACCGGGGCACACGGTCGCGATCGTCGGAC
CGACCGGCGCGGGCAAGACGACCCTGGTCAATCTGCTCATGCGGTTCTACGAGGTGACCGGCGGGCGGATCACGCTCGAC
GGGACCGACGTCGCCAGAATGACGCGTGAGGAGCTGCGCTCCGGGATAGGCATGGTGCTCCAGGACACCTGGCTGTTCGG
CGGCACGATCGCGGAGAACATCGCGTACGGCTCGTCGCGCGCCGTCACCCGCGAGGAGGTCGAGGAGGCGGCCCGGGCGG
CCCACGCCGACCGGTTCATCCGCACCCTTCCCGAGGGGTACGACACGGTCATCGACGACGAGGGTACGGGGGTGAGCGCG
GGCGAGAAGCAGCTGATCACGATCGCGCGGGCCTTCCTCTCCGATCCGGTGATCCTGGTGCTCGACGAGGCGACGAGCTC
CGTCGACACCCGTACCGAGGTGCTGATCCAGCAGGCGATGGCCCGGCTGTCGCACGGCCGCACCAGCTTCGTCATCGCGC
ACCGGCTCTCCACGATCCGGGACGCGGATGTGATTCTGGTGATGGAGAACGGGGCGATCGTGGAGCAGGGCTCGCACGAG
GAGTTGCTGGCTGCGGGCGGGGCGTATGCGCGGCTCTATGCGGCGCAGTTCGCGCAGGCGGTGGTGGAGGTGGATTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(437-586)

ABC transporter transmembrane region (ABC_membrane)

(40-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.031

97.293

0.389