Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHB13_RS10420 Genome accession   NZ_CP107921
Coordinates   2343212..2344945 (+) Length   577 a.a.
NCBI ID   WP_328376876.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00440     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2338212..2349945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB13_RS10375 (OHB13_10385) - 2338973..2339302 (-) 330 WP_328376871.1 hypothetical protein -
  OHB13_RS10380 (OHB13_10390) - 2339375..2339659 (-) 285 WP_328376872.1 hypothetical protein -
  OHB13_RS10385 (OHB13_10395) - 2339659..2340042 (-) 384 WP_328376873.1 hypothetical protein -
  OHB13_RS10390 (OHB13_10400) - 2340074..2340241 (-) 168 Protein_2060 IS5/IS1182 family transposase -
  OHB13_RS10410 (OHB13_10420) - 2341231..2341530 (+) 300 WP_328376874.1 YtxH domain-containing protein -
  OHB13_RS10415 (OHB13_10425) - 2341560..2343041 (+) 1482 WP_328376875.1 FGGY family carbohydrate kinase -
  OHB13_RS10420 (OHB13_10430) rcrP 2343212..2344945 (+) 1734 WP_328376876.1 ABC transporter ATP-binding protein Regulator
  OHB13_RS10425 (OHB13_10435) rcrQ 2344945..2346942 (+) 1998 WP_328376877.1 ABC transporter ATP-binding protein Regulator
  OHB13_RS10430 (OHB13_10440) - 2347085..2348281 (-) 1197 WP_328380260.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62337.62 Da        Isoelectric Point: 6.7004

>NTDB_id=649375 OHB13_RS10420 WP_328376876.1 2343212..2344945(+) (rcrP) [Streptomyces sp. NBC_00440]
MLISLLRTHLRPYKKPMALLALLQLLQTCATLYLPTLNADIIDNGVVKGDSGYILSYGGLMIAISVVQVICNGGAVYFGA
RTASALGRDIRAGVFDRVQSFSAREVGHFGAPSLITRTTNDVQQIQMLVLMSFTLMASAPIMCVGAIVLALGQDVPLSLV
LIAVVPVMLVLVSLIVRRMRPLFRKMQVRLDTVNRVLREQITGNRVIRAFVKDAYEKERFKGANAELTDVSLGTARLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGAMQIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLSTDSSVVP
PMNPVTELARHGHLEIRGAGFKYPGAEASVLREVALEALPGETTAVIGSTGSGKSTLLGLVPRLFDATGGAVLVDGTDVR
ELDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDDELWHALDVAQAKGFVEALEGGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRTALRRETAESTVVIVAQRVSTIRDADRIVVMDEGQVVGTGRHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=649375 OHB13_RS10420 WP_328376876.1 2343212..2344945(+) (rcrP) [Streptomyces sp. NBC_00440]
GTGCTCATATCGCTCCTGCGGACCCATTTGCGTCCGTACAAGAAACCCATGGCCCTGCTGGCGCTGCTTCAGCTGCTCCA
GACCTGCGCCACCCTCTATCTGCCGACGCTCAACGCGGACATCATCGACAACGGTGTCGTGAAGGGTGACTCGGGTTACA
TCCTGAGCTACGGCGGTCTCATGATCGCCATCAGCGTGGTTCAGGTGATCTGCAACGGGGGTGCCGTCTACTTCGGCGCC
CGGACCGCGTCCGCGCTCGGCCGGGACATCCGTGCCGGTGTCTTCGACCGGGTGCAGTCCTTCTCGGCCCGCGAGGTCGG
GCACTTCGGCGCCCCGTCCCTCATCACCCGGACGACCAATGACGTCCAGCAGATCCAGATGCTGGTCCTGATGTCGTTCA
CCCTGATGGCCTCGGCGCCGATCATGTGCGTGGGCGCCATCGTGCTGGCGCTCGGCCAGGACGTCCCGCTCTCGCTGGTC
CTGATCGCGGTCGTCCCGGTCATGCTCGTACTGGTCTCGCTGATCGTCCGGCGGATGCGGCCGCTCTTCCGGAAGATGCA
GGTCCGGCTCGACACGGTGAACCGGGTGCTGCGTGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTGAAGGACG
CGTACGAGAAGGAGCGCTTCAAGGGCGCCAACGCCGAACTGACCGACGTCTCGCTGGGGACCGCGCGGCTGATGGCCCTG
ATGTTCCCGACGGTGATGACCGTGGTGAATGTGTCGTCGATCGCGGTGGTCTGGTTCGGCGCGCACCGGATCGACAGCGG
CGCGATGCAGATCGGGGCGCTCACCGCGTTCCTCTCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGGATCCAGGAGGTCCTCTCCACCGACTCCAGCGTGGTGCCG
CCGATGAATCCCGTCACCGAGCTGGCCAGGCACGGCCATCTGGAGATCCGCGGGGCCGGGTTCAAGTACCCGGGCGCCGA
GGCGTCGGTGCTGCGGGAGGTCGCCCTGGAGGCGCTGCCCGGTGAGACGACCGCGGTGATCGGGTCGACCGGCAGCGGGA
AGTCGACGCTGCTCGGTCTCGTACCCCGGCTGTTCGACGCCACGGGCGGCGCGGTGCTGGTGGACGGCACTGACGTACGG
GAACTCGACCCGGTCCTGCTGGCGAAGACCGTGTCCCTGGTGCCGCAGAAGCCGTATCTGTTCTCCGGGACCGTCGCGAC
GAACCTGCGGTACGGGAACCCGGACGCGACCGACGATGAGCTGTGGCACGCGCTGGATGTGGCGCAGGCCAAGGGGTTCG
TCGAGGCGCTCGAAGGCGGGCTGAACGCGCCGATCGCCCAGGGCGGCACCAATGTCTCCGGCGGGCAGCGCCAGCGGCTG
GCGATCGCCAGGACGCTGGTCCAGCGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGGACCGCGCTGCGGCGCGAGACGGCGGAGTCGACCGTGGTGATCGTCGCCCAGCGCGTCTCGACCATCC
GCGACGCGGACCGGATCGTCGTCATGGACGAGGGCCAGGTCGTCGGGACCGGCCGGCACCACGAGCTGATGGACGGCAAT
GAGACATACCGGGAGATCGTGCTCTCCCAGCTGACCGAGGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.966

100

0.404