Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHB13_RS07640 Genome accession   NZ_CP107921
Coordinates   1690641..1691636 (+) Length   331 a.a.
NCBI ID   WP_328376448.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00440     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1685641..1696636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB13_RS07625 (OHB13_07635) - 1687561..1688853 (+) 1293 WP_328376444.1 ABC transporter substrate-binding protein -
  OHB13_RS07630 (OHB13_07640) - 1688866..1689792 (+) 927 WP_328376446.1 sugar ABC transporter permease -
  OHB13_RS07635 (OHB13_07645) - 1689817..1690644 (+) 828 WP_266858090.1 carbohydrate ABC transporter permease -
  OHB13_RS07640 (OHB13_07650) cytR 1690641..1691636 (+) 996 WP_328376448.1 LacI family DNA-binding transcriptional regulator Regulator
  OHB13_RS07645 (OHB13_07655) - 1691655..1693604 (+) 1950 WP_328376449.1 cellulase family glycosylhydrolase -
  OHB13_RS07650 (OHB13_07660) - 1693723..1695579 (+) 1857 WP_328376450.1 hypothetical protein -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 34969.77 Da        Isoelectric Point: 7.2649

>NTDB_id=649372 OHB13_RS07640 WP_328376448.1 1690641..1691636(+) (cytR) [Streptomyces sp. NBC_00440]
MSPAPAAGSRPTIKDVAAQAGVSTAAVSKVFNNTGRISEPTRRRVLETAGRLGWSPSASASALRRARTHTVAMVVRRPTD
VLGTDLHFSELITGLESELSPRGYGLLLHLTGDVREETALYERLAAEGRVDGAVLTEHRADDPRPPLLERLGLPAVLLGT
AHGSGVSEAVRHLLDLGHRRIAYVTGPTGLLHTRFRQRVFEETLAGAGLVPVAVLHTDFTEAAATSATEQLLALDPRPTA
IVFANDSMAVCGIGTAQRAGLSVPAELSVVGYDNLPVGSWIHPRLTTVDQYVQRAGAAAARALLAQCGEDVPPEPLTGQP
RLVVRESTGPV

Nucleotide


Download         Length: 996 bp        

>NTDB_id=649372 OHB13_RS07640 WP_328376448.1 1690641..1691636(+) (cytR) [Streptomyces sp. NBC_00440]
GTGAGCCCGGCTCCGGCGGCCGGCTCCCGGCCCACGATCAAGGACGTCGCCGCGCAGGCCGGGGTCTCCACGGCGGCCGT
GTCCAAGGTCTTCAACAACACCGGCCGGATCTCCGAGCCGACCCGGCGCCGCGTCCTGGAGACGGCCGGGCGGCTCGGCT
GGTCGCCGAGCGCGTCGGCGAGCGCGCTGCGCAGGGCCCGTACGCACACGGTCGCGATGGTCGTACGCCGCCCCACCGAC
GTTCTCGGCACCGACCTGCACTTCTCCGAGCTGATCACCGGGCTGGAGAGCGAGCTGTCGCCGCGCGGGTACGGGCTGCT
GCTGCATCTGACCGGCGATGTGCGCGAGGAGACCGCGCTGTACGAACGCCTCGCCGCCGAGGGCCGGGTCGACGGGGCCG
TGCTGACCGAGCACCGGGCCGACGACCCGCGCCCGCCGCTGCTCGAACGGCTCGGGCTGCCCGCGGTCCTGCTGGGCACG
GCGCACGGCAGCGGAGTCAGCGAGGCGGTCCGCCATCTGCTGGATCTGGGACACCGGCGCATCGCCTATGTGACCGGGCC
GACGGGGCTGCTGCACACGCGCTTCCGGCAGCGGGTCTTCGAGGAGACCCTGGCCGGGGCGGGCCTGGTCCCGGTCGCGG
TGCTCCACACGGACTTCACCGAGGCGGCAGCCACTTCCGCCACCGAGCAGCTGCTCGCCCTCGACCCGCGGCCCACCGCC
ATCGTCTTCGCCAACGACTCGATGGCGGTCTGCGGCATCGGCACGGCGCAGCGCGCGGGGCTCTCCGTGCCCGCGGAACT
GTCCGTCGTCGGCTATGACAACCTGCCGGTCGGCAGCTGGATCCACCCCCGGCTGACCACGGTCGACCAGTACGTCCAGC
GGGCCGGCGCGGCTGCCGCCCGGGCACTGCTCGCGCAGTGCGGCGAGGACGTACCCCCTGAACCCCTCACCGGACAACCC
CGGCTCGTCGTACGCGAGTCGACCGGTCCCGTCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(12-57)

Periplasmic binding protein-like domain (Peripla_BP_3)

(170-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.905

100

0.366