Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   OHB13_RS07540 Genome accession   NZ_CP107921
Coordinates   1663798..1666803 (-) Length   1001 a.a.
NCBI ID   WP_328376420.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00440     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1658798..1671803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB13_RS07520 (OHB13_07530) uvrC 1659175..1661166 (-) 1992 WP_328376414.1 excinuclease ABC subunit UvrC -
  OHB13_RS07525 (OHB13_07535) - 1661220..1661645 (-) 426 WP_328376416.1 Rieske (2Fe-2S) protein -
  OHB13_RS07530 (OHB13_07540) - 1661769..1662686 (+) 918 WP_266858122.1 carbohydrate kinase -
  OHB13_RS07535 (OHB13_07545) - 1662816..1663658 (-) 843 WP_328376418.1 alpha/beta hydrolase -
  OHB13_RS07540 (OHB13_07550) uvrA 1663798..1666803 (-) 3006 WP_328376420.1 excinuclease ABC subunit UvrA Machinery gene
  OHB13_RS07545 (OHB13_07555) - 1666992..1667615 (+) 624 WP_328376422.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  OHB13_RS07550 (OHB13_07560) - 1667692..1668348 (+) 657 WP_266858118.1 MBL fold metallo-hydrolase -
  OHB13_RS07555 (OHB13_07565) - 1668403..1669392 (-) 990 WP_266858117.1 TerC/Alx family metal homeostasis membrane protein -
  OHB13_RS07560 (OHB13_07570) - 1669685..1671661 (-) 1977 WP_328376426.1 TerD family protein -

Sequence

Protein


Download         Length: 1001 a.a.        Molecular weight: 109961.16 Da        Isoelectric Point: 7.5717

>NTDB_id=649370 OHB13_RS07540 WP_328376420.1 1663798..1666803(-) (uvrA) [Streptomyces sp. NBC_00440]
MADRLIVRGAREHNLKNVSIDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARQFLGQMDKPDVDFIEGL
SPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLFARIGKPHCPQCGRPISRQSPQAIVDKVLELPEGSRFQVLSPLVRERK
GEFVDLFSDLQTKGYSRARVDGETIQLSEPPKLKKQEKHTIEVVIDRLTVKDSAKRRLTDSVETALGLAGGMVILDFVDL
PADDPERERMYSEHLYCAYDDLSFEELEPRSFSFNSPFGACPDCTGIGTRMEVDPELLVPDEDKSLDEGAISPWSHGHTK
EYFARLVGALSEELGFRTDIPWAGLPQRAKKALLNGHKTQIEVRYRNRYGRERAYTTSFEGVVPFVKRRHSEAESDSSRE
RFEGYMREVPCPTCEGTRLKPIVLAVTVMEKSIAEVAAMSISECADFLGRLKLNARDKKIAERVLKEVNERLKFLVDVGL
DYLSLNRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLIRLRDMGNTLIVVEHDEDTIKVAD
WVVDIGPGAGEHGGKVVHSGSLKDLLTNKESLTGQYLAGKKAIPIPDVRRPVDPGRRLTVHGARENNLQDIDVPFPLGVL
TAVTGVSGSGKSTLVNDILYTHLARELNGARTVPGRHTRVDGDDLVDKVVHVDQSPIGRTPRSNPATYTGVFDHVRRLFA
ETMEAKVRGYLPGRFSFNVKGGRCENCSGDGTIKIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKSIAEVLDMPIEEG
LDFFEAVPTIARHLRTLNEVGLGYVRLGQSAPTLSGGEAQRVKLASELQKRSTGRTVYVLDEPTTGLHFEDISKLINVLS
GLVDKGNTVIVIEHNLDVVKTADWVIDMGPEGGNGGGLVIAEGTPEQVAGVPASHTGKFLRDILDSDRISDATPVSKAPA
KKAAAKGAAVKKTAAKKPAAEKAAPKKAAAKKTTRTRRASS

Nucleotide


Download         Length: 3006 bp        

>NTDB_id=649370 OHB13_RS07540 WP_328376420.1 1663798..1666803(-) (uvrA) [Streptomyces sp. NBC_00440]
GTGGCCGACCGTCTCATCGTTCGTGGCGCTCGCGAGCACAATCTCAAGAACGTCTCGATCGACCTCCCGCGTGACTCCCT
GATCGTCTTCACCGGGCTCTCCGGATCGGGAAAGTCCTCCCTCGCGTTCGACACGATCTTCGCCGAGGGGCAGCGCCGCT
ATGTCGAGTCGCTCTCCTCGTACGCCCGGCAGTTCCTCGGGCAGATGGACAAGCCCGATGTGGACTTCATCGAGGGGCTG
TCCCCCGCTGTCTCCATCGACCAGAAGTCGACCTCGCGCAACCCGCGCTCGACGGTCGGCACCATCACCGAGGTCTACGA
CTACCTGCGTCTGCTCTTCGCGCGCATCGGCAAGCCGCACTGCCCCCAGTGCGGCCGGCCCATCTCGCGGCAGTCCCCGC
AGGCCATCGTCGACAAGGTCCTCGAACTGCCGGAGGGCAGCCGCTTCCAGGTGCTCTCGCCGCTCGTGCGGGAGCGCAAG
GGCGAATTCGTCGACCTCTTCTCCGACCTCCAGACCAAGGGGTACAGCCGTGCCCGGGTGGACGGCGAGACGATCCAGCT
CTCCGAGCCGCCCAAGCTGAAGAAGCAGGAGAAGCACACCATCGAGGTGGTCATCGACCGCCTCACGGTCAAGGACAGCG
CCAAGCGTCGCCTCACCGACTCGGTGGAGACCGCGCTCGGGCTGGCCGGCGGCATGGTCATCCTGGACTTCGTCGATCTG
CCCGCGGACGACCCCGAGCGTGAGCGGATGTACTCCGAGCACCTCTACTGCGCGTACGACGACCTGTCCTTCGAAGAGCT
GGAGCCGCGCTCCTTCTCGTTCAACTCGCCCTTCGGCGCCTGCCCCGACTGCACCGGCATCGGGACGCGCATGGAGGTCG
ACCCCGAGCTGCTCGTCCCGGACGAGGACAAGTCACTCGACGAGGGCGCGATCTCGCCGTGGTCGCACGGCCACACCAAG
GAGTACTTCGCACGGCTGGTCGGTGCGCTCTCCGAAGAGCTCGGATTCCGGACGGACATCCCCTGGGCCGGGCTGCCGCA
GCGCGCCAAGAAGGCCCTGCTGAACGGCCACAAGACCCAGATCGAGGTCCGCTACCGCAACCGGTACGGGCGGGAGCGCG
CCTACACGACCTCCTTCGAAGGCGTGGTGCCCTTCGTCAAGCGGCGGCACTCGGAGGCCGAGAGCGACTCCAGCAGGGAG
CGCTTCGAGGGCTATATGCGCGAGGTGCCCTGCCCGACCTGTGAGGGCACCCGGCTGAAGCCGATCGTCCTCGCGGTCAC
CGTGATGGAGAAGTCCATCGCCGAGGTCGCCGCGATGTCGATCAGTGAGTGCGCGGACTTCCTGGGCCGGCTGAAGCTCA
ACGCCCGCGACAAGAAGATCGCCGAGCGGGTGCTCAAGGAGGTCAACGAACGGCTGAAGTTCCTGGTCGACGTCGGTCTC
GACTACCTCTCGCTCAACCGCGCGGCGGGCACGCTCTCCGGCGGCGAGGCGCAGCGCATCAGGCTGGCGACGCAGATCGG
TTCCGGTCTGGTCGGTGTGCTGTACGTGCTGGACGAGCCGTCCATCGGCCTGCACCAGCGCGACAACCACCGTCTCATCG
AGACGCTCATCCGGCTGCGCGACATGGGCAACACCTTGATCGTCGTCGAACACGACGAGGACACCATCAAGGTCGCCGAC
TGGGTCGTGGACATCGGCCCCGGCGCGGGTGAGCACGGCGGCAAGGTCGTGCACTCCGGGTCGCTGAAGGACCTGCTCAC
CAACAAGGAGTCCCTGACCGGCCAGTACCTGGCGGGCAAGAAGGCCATCCCGATCCCGGACGTGCGCAGGCCCGTGGACC
CGGGGCGGCGGCTGACGGTGCACGGTGCCCGGGAGAACAACCTCCAGGACATCGACGTGCCCTTCCCGCTCGGGGTGCTG
ACCGCGGTCACCGGTGTCTCGGGATCCGGCAAGTCGACCCTGGTCAACGACATCCTCTACACGCACCTGGCGCGTGAGCT
CAACGGCGCGCGTACGGTGCCCGGCCGGCACACCCGGGTCGACGGCGACGACCTGGTCGACAAGGTCGTTCACGTCGACC
AGTCGCCCATCGGCCGTACTCCCCGGTCCAACCCGGCGACGTACACCGGTGTCTTCGACCATGTGCGCAGGCTCTTCGCC
GAGACGATGGAGGCCAAGGTCCGGGGGTACCTGCCGGGGCGCTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAGAACTG
CTCGGGCGACGGCACGATCAAGATCGAGATGAACTTCCTGCCGGATGTGTACGTCCCGTGCGAGGTCTGCCACGGCGCGC
GCTACAACCGGGAGACCCTTGAGGTCCACTACAAGGGCAAGTCCATCGCCGAGGTCCTGGACATGCCGATCGAAGAGGGC
CTGGACTTCTTCGAGGCCGTCCCGACCATCGCGCGTCATCTGCGCACGCTCAACGAGGTGGGCCTCGGCTACGTCAGGCT
CGGGCAGTCCGCGCCGACGCTGTCGGGCGGCGAGGCACAGCGGGTGAAGCTGGCGAGCGAGCTCCAGAAGCGCTCCACCG
GCCGCACCGTCTATGTCCTGGACGAGCCGACGACGGGCCTCCACTTCGAGGACATCAGCAAGCTGATCAACGTGCTGTCG
GGCCTGGTCGACAAGGGGAACACGGTGATCGTCATCGAGCACAACCTGGATGTCGTCAAGACGGCGGACTGGGTCATCGA
CATGGGGCCCGAGGGCGGCAACGGCGGAGGCCTGGTCATCGCGGAGGGCACCCCGGAGCAGGTCGCGGGGGTCCCGGCCA
GCCACACCGGGAAGTTCCTCCGGGACATCCTGGACTCCGACCGGATCAGCGACGCGACTCCGGTCAGCAAGGCGCCGGCG
AAGAAGGCCGCAGCGAAGGGGGCCGCAGTGAAGAAGACAGCGGCCAAGAAGCCGGCAGCGGAGAAGGCAGCGCCGAAGAA
GGCGGCCGCGAAGAAGACGACGCGTACACGCCGCGCCTCGTCGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(628-864)

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-403)

UvrA interaction domain (UvrA_inter)

(131-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.614

94.406

0.534
  uvrA Streptococcus pneumoniae TIGR4

56.614

94.406

0.534
  uvrA Streptococcus pneumoniae D39

56.614

94.406

0.534