Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   L2Z42_RS11455 Genome accession   NZ_CP091335
Coordinates   2367077..2367403 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain ATCC17978-VUB     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2362077..2372403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z42_RS11435 (L2Z42_11435) - 2362180..2362809 (-) 630 WP_000219965.1 FHA domain-containing protein -
  L2Z42_RS11440 (L2Z42_11440) gspD 2362850..2365126 (-) 2277 WP_001196435.1 type II secretion system secretin GspD -
  L2Z42_RS11445 (L2Z42_11445) - 2365168..2366004 (-) 837 WP_000870030.1 type II secretion system protein N -
  L2Z42_RS11450 (L2Z42_11450) gspN 2366004..2366746 (-) 743 Protein_2239 type II secretion system protein N -
  L2Z42_RS11455 (L2Z42_11455) hns 2367077..2367403 (-) 327 WP_000801427.1 H-NS histone family protein Regulator
  L2Z42_RS11460 (L2Z42_11460) - 2367598..2368038 (-) 441 WP_000661569.1 thioesterase family protein -
  L2Z42_RS11465 (L2Z42_11465) - 2368046..2369239 (-) 1194 WP_000681780.1 membrane protein -
  L2Z42_RS11470 (L2Z42_11470) - 2369249..2370088 (-) 840 WP_001230201.1 hypothetical protein -
  L2Z42_RS11475 (L2Z42_11475) - 2370097..2370864 (-) 768 WP_000897412.1 uroporphyrinogen-III synthase -
  L2Z42_RS11480 (L2Z42_11480) hemC 2370869..2371786 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=649367 L2Z42_RS11455 WP_000801427.1 2367077..2367403(-) (hns) [Acinetobacter baumannii strain ATCC17978-VUB]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=649367 L2Z42_RS11455 WP_000801427.1 2367077..2367403(-) (hns) [Acinetobacter baumannii strain ATCC17978-VUB]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1