Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OHR86_RS24340 Genome accession   NZ_CP107919
Coordinates   5347400..5348590 (+) Length   396 a.a.
NCBI ID   WP_328902624.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00441     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5342400..5353590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHR86_RS24330 (OHR86_24355) - 5344475..5345899 (+) 1425 WP_328902622.1 sugar porter family MFS transporter -
  OHR86_RS24335 (OHR86_24360) - 5345896..5347275 (-) 1380 WP_328902623.1 cytosine permease -
  OHR86_RS24340 (OHR86_24365) pilA 5347400..5348590 (+) 1191 WP_328902624.1 signal recognition particle-docking protein FtsY Machinery gene
  OHR86_RS24345 (OHR86_24370) - 5348663..5349322 (-) 660 WP_328902625.1 bifunctional DNA primase/polymerase -
  OHR86_RS24350 (OHR86_24375) - 5349684..5351156 (+) 1473 WP_328902626.1 hypothetical protein -
  OHR86_RS24355 (OHR86_24380) - 5351533..5352876 (+) 1344 WP_328902627.1 ammonium transporter -
  OHR86_RS24360 (OHR86_24385) - 5352873..5353211 (+) 339 WP_018102395.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 396 a.a.        Molecular weight: 41715.68 Da        Isoelectric Point: 4.4900

>NTDB_id=649339 OHR86_RS24340 WP_328902624.1 5347400..5348590(+) (pilA) [Streptomyces sp. NBC_00441]
MEFVILAVVIALVAVGVISGLVVSSRKKKQLPPAPSSTPTLTPPTEPRVGEEAEEPREESRRTIEDVSAPPAEAEPETVE
PAAPALDVPEPTAGRLVRLRARLARSQNTLGKGLLALLSRDNLDEDTWEEIEDTLLTADVGVAPTQELVGRLRERVRVLG
TRTPEELRTLLREELLTLLGTDFDRAVKTEGGLETPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAAA
DQLQTWGERVGARTVRGPEGGDPASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGPLDEVLLVL
DATTGQNGLVQARVFAEVVAITGIVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGPDDLAPFEPEAFVDALIGD

Nucleotide


Download         Length: 1191 bp        

>NTDB_id=649339 OHR86_RS24340 WP_328902624.1 5347400..5348590(+) (pilA) [Streptomyces sp. NBC_00441]
ATGGAATTCGTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGTGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCCCCGGCACCGTCGAGCACGCCGACCCTCACACCTCCCACCGAGCCCCGTGTCGGCGAGGAGGCCG
AAGAGCCGCGCGAGGAATCGCGCCGCACCATCGAGGACGTCTCGGCCCCGCCGGCCGAGGCCGAGCCGGAGACCGTGGAG
CCGGCAGCCCCCGCGCTCGACGTCCCCGAGCCCACCGCCGGCCGGCTCGTCCGGCTGCGCGCCCGCCTCGCCCGCTCGCA
GAACACCCTCGGCAAGGGGCTCCTCGCGCTCCTGTCCCGGGACAATCTGGACGAGGACACCTGGGAGGAGATCGAGGACA
CCCTCCTCACCGCCGATGTCGGCGTCGCCCCCACCCAGGAGCTGGTCGGGCGCCTGCGCGAGCGCGTCCGGGTGCTCGGC
ACCCGCACCCCCGAGGAGCTGCGCACCCTGCTCCGCGAGGAGCTGCTCACCCTGCTCGGCACCGACTTCGACCGTGCGGT
GAAGACGGAGGGCGGTCTGGAGACCCCCGGCGTCGTGATGGTCGTCGGCGTCAACGGCACCGGCAAGACCACCACCACCG
GCAAGCTGGCCCGGGTGCTCGTCGCCGACGGCCGCAGCGTGGTGCTCGGCGCGGCCGACACCTTCCGCGCCGCCGCCGCC
GACCAGCTTCAGACCTGGGGCGAGCGCGTCGGCGCCCGCACCGTGCGCGGTCCGGAGGGCGGCGACCCGGCGTCCATCGC
CTACGACGCGGTCAAGGAGGGCATCGCCGAGGGCGCCGACGTGGTGCTCATCGACACCGCGGGCCGACTGCACACCAAGA
CCGGGCTCATGGACGAGCTGGGCAAGGTCAAGCGCGTCGTGGAGAAGCACGGCCCGCTGGACGAGGTGCTGCTCGTCCTG
GACGCCACCACCGGACAGAACGGCCTCGTGCAGGCGCGGGTCTTCGCCGAGGTGGTCGCCATCACCGGCATCGTCCTCAC
CAAGCTGGACGGCACCGCCAAGGGCGGCATCGTCATCGCCGTCCAGCGCGAGCTGGGCGTCCCGGTCAAGCTCGTCGGAC
TCGGCGAGGGCCCGGACGACCTGGCCCCGTTCGAGCCGGAGGCGTTCGTGGACGCGCTGATCGGGGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(197-394)

SRP54-type protein, helical bundle domain (SRP54_N)

(110-175)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.803

92.424

0.386