Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   L2Z43_RS13345 Genome accession   NZ_CP091334
Coordinates   2816910..2817236 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain ATCC19606-VUB     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2811910..2822236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z43_RS13320 (L2Z43_13320) hemC 2812526..2813443 (+) 918 WP_002159654.1 hydroxymethylbilane synthase -
  L2Z43_RS13325 (L2Z43_13325) - 2813448..2814215 (+) 768 WP_000897410.1 uroporphyrinogen-III synthase -
  L2Z43_RS13330 (L2Z43_13330) - 2814224..2815063 (+) 840 WP_001230200.1 hypothetical protein -
  L2Z43_RS13335 (L2Z43_13335) - 2815073..2816266 (+) 1194 WP_000681780.1 membrane protein -
  L2Z43_RS13340 (L2Z43_13340) - 2816274..2816715 (+) 442 Protein_2597 thioesterase family protein -
  L2Z43_RS13345 (L2Z43_13345) hns 2816910..2817236 (+) 327 WP_000801427.1 H-NS histone family protein Regulator
  L2Z43_RS13350 (L2Z43_13350) gspN 2817569..2818311 (+) 743 Protein_2599 type II secretion system protein N -
  L2Z43_RS13355 (L2Z43_13355) - 2818311..2819147 (+) 837 WP_000870031.1 type II secretion system protein N -
  L2Z43_RS13360 (L2Z43_13360) gspD 2819189..2821459 (+) 2271 WP_001196431.1 type II secretion system secretin GspD -
  L2Z43_RS13365 (L2Z43_13365) - 2821500..2822129 (+) 630 WP_000219966.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=649336 L2Z43_RS13345 WP_000801427.1 2816910..2817236(+) (hns) [Acinetobacter baumannii strain ATCC19606-VUB]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=649336 L2Z43_RS13345 WP_000801427.1 2816910..2817236(+) (hns) [Acinetobacter baumannii strain ATCC19606-VUB]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1