Detailed information    

insolico Bioinformatically predicted

Overview


Name   tsaP   Type   Machinery gene
Locus tag   L2Z43_RS12900 Genome accession   NZ_CP091334
Coordinates   2723957..2725111 (-) Length   384 a.a.
NCBI ID   WP_000755112.1    Uniprot ID   A0A6F8TKE6
Organism   Acinetobacter baumannii strain ATCC19606-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2718957..2730111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z43_RS12880 (L2Z43_12880) - 2720118..2720768 (+) 651 WP_001984979.1 TetR/AcrR family transcriptional regulator -
  L2Z43_RS12885 (L2Z43_12885) - 2720874..2721794 (+) 921 WP_000084546.1 DMT family transporter -
  L2Z43_RS12890 (L2Z43_12890) - 2722186..2722755 (-) 570 WP_000633612.1 Sua5/YciO/YrdC/YwlC family protein -
  L2Z43_RS12895 (L2Z43_12895) dprA 2722806..2723936 (-) 1131 WP_001984977.1 DNA-processing protein DprA Machinery gene
  L2Z43_RS12900 (L2Z43_12900) tsaP 2723957..2725111 (-) 1155 WP_000755112.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  L2Z43_RS12905 (L2Z43_12905) def 2725234..2725764 (+) 531 WP_001196539.1 peptide deformylase -
  L2Z43_RS12910 (L2Z43_12910) - 2725801..2726229 (+) 429 WP_000231976.1 DUF2946 family protein -
  L2Z43_RS12915 (L2Z43_12915) - 2726302..2728416 (+) 2115 WP_001120684.1 TonB-dependent copper receptor -
  L2Z43_RS12920 (L2Z43_12920) - 2728470..2728676 (+) 207 WP_000182542.1 hypothetical protein -
  L2Z43_RS12925 (L2Z43_12925) - 2728746..2729960 (-) 1215 WP_001177956.1 oxygenase MpaB family protein -

Sequence


Protein


Download         Length: 384 a.a.        Molecular weight: 42424.31 Da        Isoelectric Point: 8.2461

>NTDB_id=649331 L2Z43_RS12900 WP_000755112.1 2723957..2725111(-) (tsaP) [Acinetobacter baumannii strain ATCC19606-VUB]
MKKVFDGMVNFHALGIKKHLLALALCTGVTIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCNLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDSGKIIRVMGSIGRAAKNSVVTLDRGTTQGVQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=649331 L2Z43_RS12900 WP_000755112.1 2723957..2725111(-) (tsaP) [Acinetobacter baumannii strain ATCC19606-VUB]
ATGAAAAAGGTTTTTGACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCTTTGGCGCTCTGTAC
AGGTGTCACAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAACCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTCGGTATTATTCGCCGCTATACAGGTCAAACCACAAACC
TACAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTTCTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGTTACTACAGGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTTCGTCGTGGTGATCGTGTTATGCCTGA
AGAGCAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATAGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGACCGCGGTACAACCCAAGGCGTTCAAGTAGGCCAA
GTTTTTGATATTACCCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains


Predicted by InterproScan.

(57-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A6F8TKE6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

98.177

100

0.982