Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L2Z44_RS17990 Genome accession   NZ_CP091333
Coordinates   3752333..3752914 (+) Length   193 a.a.
NCBI ID   WP_001215082.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DSM30011-VUB     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3747333..3757914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z44_RS17965 (L2Z44_17965) - 3747954..3748307 (+) 354 WP_075399863.1 DUF1304 domain-containing protein -
  L2Z44_RS17970 (L2Z44_17970) - 3748360..3748701 (+) 342 WP_000263330.1 GlpM family protein -
  L2Z44_RS17975 (L2Z44_17975) tenA 3748751..3749425 (-) 675 WP_000899418.1 thiaminase II -
  L2Z44_RS17980 (L2Z44_17980) - 3749688..3750770 (+) 1083 WP_000680213.1 DUF475 domain-containing protein -
  L2Z44_RS17985 (L2Z44_17985) - 3750917..3752281 (+) 1365 WP_000980460.1 MFS transporter -
  L2Z44_RS17990 (L2Z44_17990) ssb 3752333..3752914 (+) 582 WP_001215082.1 single-stranded DNA-binding protein Machinery gene
  L2Z44_RS17995 (L2Z44_17995) - 3753070..3754296 (+) 1227 WP_075399864.1 site-specific integrase -
  L2Z44_RS18000 (L2Z44_18000) - 3754289..3755845 (+) 1557 WP_075399865.1 site-specific integrase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20965.80 Da        Isoelectric Point: 6.4822

>NTDB_id=649286 L2Z44_RS17990 WP_001215082.1 3752333..3752914(+) (ssb) [Acinetobacter baumannii strain DSM30011-VUB]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNTGGYGGQGGF
GNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=649286 L2Z44_RS17990 WP_001215082.1 3752333..3752914(+) (ssb) [Acinetobacter baumannii strain DSM30011-VUB]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACCGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAAGTTTATATCGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGTCAAGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTATCAAAATAACAACCAAGGTGGTGGCTACGGCCAAAACACTGGTGGTTATGGTGGCCAAGGTGGTTTC
GGTAATGGTGGCAATAGCCCACAAGGTGGTGGTTTTGCCCCTAAAGCACCACAACAACCAGCATCTGCACCAGCTGATTT
AGACGACGATTTACCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.485

100

0.539
  ssb Vibrio cholerae strain A1552

44.221

100

0.456
  ssb Neisseria meningitidis MC58

38.579

100

0.394
  ssb Neisseria gonorrhoeae MS11

38.579

100

0.394