Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHR86_RS02370 Genome accession   NZ_CP107919
Coordinates   543498..544502 (+) Length   334 a.a.
NCBI ID   WP_328898974.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00441     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 538498..549502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHR86_RS02360 (OHR86_02365) - 540181..542451 (+) 2271 WP_328904239.1 AbfB domain-containing protein -
  OHR86_RS02365 (OHR86_02370) - 542502..543341 (-) 840 WP_328898973.1 phytanoyl-CoA dioxygenase family protein -
  OHR86_RS02370 (OHR86_02375) cytR 543498..544502 (+) 1005 WP_328898974.1 LacI family DNA-binding transcriptional regulator Regulator
  OHR86_RS02375 (OHR86_02380) - 544598..547870 (-) 3273 WP_328898975.1 LamG-like jellyroll fold domain-containing protein -
  OHR86_RS02380 (OHR86_02385) - 548102..549199 (-) 1098 WP_328898976.1 NADH:flavin oxidoreductase/NADH oxidase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 34971.85 Da        Isoelectric Point: 6.5053

>NTDB_id=649286 OHR86_RS02370 WP_328898974.1 543498..544502(+) (cytR) [Streptomyces sp. NBC_00441]
MAARLKDVAALAGVSVRTVSNVVSNTAAVAPGTRARVLAAVEELGYRPNLAARNLRQGRTGLIGVAVPEIHSPYFGALTG
LLIDAAQERGWTVLVERTGGRADLERRLLDGSEGHQVDGLIISPWSTPPAELSALAGGLPLVVLGELDPHGSIDHVALDN
VAAARDAARHLVATGRRRVAAIGLQSALGHGTAELRAEGFRRGLAEAGLSPVAEVEVADLHRAEGARALRELLELPERPD
AVFCFSDELALGALRAAGERGVRVPGDLALVGFDDIEDGRFATPSLTTVSPDPAQIAERAVQCLSERVLGRLSGLAARRI
VVPHRLLVRESSGA

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=649286 OHR86_RS02370 WP_328898974.1 543498..544502(+) (cytR) [Streptomyces sp. NBC_00441]
GTGGCAGCGAGACTCAAGGACGTGGCCGCGCTCGCCGGTGTGTCCGTCAGGACCGTCTCCAACGTGGTGAGCAACACGGC
CGCCGTCGCCCCCGGTACCCGGGCCCGGGTGCTCGCCGCGGTGGAGGAGCTGGGCTACCGGCCCAACCTCGCCGCCCGCA
ACCTCCGCCAGGGCCGCACGGGGCTCATCGGGGTGGCCGTCCCGGAGATCCACTCCCCCTACTTCGGCGCGTTGACGGGC
CTCCTCATCGACGCCGCCCAGGAGCGCGGCTGGACGGTGCTCGTGGAGCGCACGGGGGGCCGGGCGGACCTGGAGCGGCG
GCTGCTGGACGGCTCCGAGGGGCACCAGGTGGACGGGCTGATCATCAGCCCCTGGTCGACGCCCCCCGCCGAACTGTCCG
CGCTCGCGGGCGGCCTGCCGCTCGTCGTCCTCGGCGAGCTCGATCCGCACGGGTCCATCGACCATGTGGCGCTGGACAAC
GTGGCGGCGGCCCGGGACGCCGCCCGGCATCTGGTGGCGACGGGCCGCCGGCGGGTCGCCGCGATCGGACTCCAGTCCGC
GCTGGGGCACGGCACGGCCGAGCTGCGGGCCGAGGGCTTCCGGCGGGGGCTCGCGGAGGCGGGGCTGAGCCCGGTTGCCG
AGGTGGAGGTGGCGGACCTGCACCGGGCGGAGGGGGCGCGGGCGCTGCGTGAGCTGCTGGAGCTGCCGGAGCGCCCGGAC
GCGGTGTTCTGCTTCAGCGACGAACTCGCCCTGGGGGCGCTGCGGGCGGCCGGTGAGCGGGGGGTGCGGGTGCCCGGGGA
CCTGGCGCTGGTGGGCTTTGACGACATCGAGGACGGGCGGTTCGCCACGCCTTCGCTGACCACGGTGTCGCCCGACCCGG
CGCAGATCGCGGAGCGGGCGGTGCAGTGTCTGAGCGAGCGCGTGCTCGGGCGGCTCTCGGGGCTGGCGGCGCGCCGGATC
GTGGTGCCGCACCGGCTGCTGGTGCGGGAGAGCAGCGGGGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-49)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.095

100

0.365