Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   L2Z44_RS15505 Genome accession   NZ_CP091333
Coordinates   3227897..3228223 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain DSM30011-VUB     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3222897..3233223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z44_RS15485 (L2Z44_15485) - 3223003..3223632 (-) 630 WP_075400776.1 FHA domain-containing protein -
  L2Z44_RS15490 (L2Z44_15490) gspD 3223673..3225943 (-) 2271 WP_001196431.1 type II secretion system secretin GspD -
  L2Z44_RS15495 (L2Z44_15495) - 3225985..3226821 (-) 837 WP_000870031.1 type II secretion system protein N -
  L2Z44_RS15500 (L2Z44_15500) gspN 3226821..3227564 (-) 744 WP_075400777.1 type II secretion system protein N -
  L2Z44_RS15505 (L2Z44_15505) hns 3227897..3228223 (-) 327 WP_000801427.1 H-NS histone family protein Regulator
  L2Z44_RS15510 (L2Z44_15510) - 3228418..3228858 (-) 441 WP_000661569.1 thioesterase family protein -
  L2Z44_RS15515 (L2Z44_15515) - 3228866..3230059 (-) 1194 WP_000681777.1 hypothetical protein -
  L2Z44_RS15520 (L2Z44_15520) - 3230069..3230908 (-) 840 WP_001230201.1 hypothetical protein -
  L2Z44_RS15525 (L2Z44_15525) - 3230917..3231684 (-) 768 WP_005112435.1 uroporphyrinogen-III synthase -
  L2Z44_RS15530 (L2Z44_15530) hemC 3231689..3232606 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=649277 L2Z44_RS15505 WP_000801427.1 3227897..3228223(-) (hns) [Acinetobacter baumannii strain DSM30011-VUB]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=649277 L2Z44_RS15505 WP_000801427.1 3227897..3228223(-) (hns) [Acinetobacter baumannii strain DSM30011-VUB]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1