Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   L2Z44_RS07835 Genome accession   NZ_CP091333
Coordinates   1667935..1668315 (-) Length   126 a.a.
NCBI ID   WP_075400333.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DSM30011-VUB     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1662935..1673315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z44_RS07805 (L2Z44_07805) tadA 1663054..1663557 (-) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -
  L2Z44_RS07810 (L2Z44_07810) - 1663564..1664688 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  L2Z44_RS07815 (L2Z44_07815) ung 1664685..1665398 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  L2Z44_RS07820 (L2Z44_07820) - 1665449..1666045 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  L2Z44_RS07825 (L2Z44_07825) gspK 1666275..1667234 (-) 960 WP_075400331.1 type II secretion system minor pseudopilin GspK -
  L2Z44_RS07830 (L2Z44_07830) xcpW 1667234..1667935 (-) 702 WP_075400332.1 type II secretion system minor pseudopilin GspJ Machinery gene
  L2Z44_RS07835 (L2Z44_07835) xcpV 1667935..1668315 (-) 381 WP_075400333.1 type II secretion system minor pseudopilin GspI Machinery gene
  L2Z44_RS07840 (L2Z44_07840) - 1668305..1668859 (-) 555 WP_075400334.1 type II secretion system protein -
  L2Z44_RS07845 (L2Z44_07845) - 1668869..1669477 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  L2Z44_RS07850 (L2Z44_07850) - 1669515..1670288 (-) 774 WP_000497301.1 TatD family hydrolase -
  L2Z44_RS07855 (L2Z44_07855) - 1670306..1670647 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  L2Z44_RS07860 (L2Z44_07860) - 1670659..1671639 (-) 981 WP_001075411.1 DNA polymerase III subunit delta' -
  L2Z44_RS07865 (L2Z44_07865) kdsB 1671651..1672412 (-) 762 WP_000680704.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13979.19 Da        Isoelectric Point: 9.8004

>NTDB_id=649262 L2Z44_RS07835 WP_075400333.1 1667935..1668315(-) (xcpV) [Acinetobacter baumannii strain DSM30011-VUB]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQAETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYSVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=649262 L2Z44_RS07835 WP_075400333.1 1667935..1668315(-) (xcpV) [Acinetobacter baumannii strain DSM30011-VUB]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAAAGTAAGCAAGTAACTTCCCAAGCTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATTCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

98.413

100

0.984