Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OG432_RS16855 Genome accession   NZ_CP107918
Coordinates   3721683..3722804 (+) Length   373 a.a.
NCBI ID   WP_328311756.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00442     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3716683..3727804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG432_RS16840 (OG432_16835) dnaA 3716750..3718576 (+) 1827 WP_328311753.1 chromosomal replication initiator protein DnaA -
  OG432_RS16845 (OG432_16840) dnaN 3719505..3720635 (+) 1131 WP_328311754.1 DNA polymerase III subunit beta -
  OG432_RS16850 (OG432_16845) gnd 3720765..3721640 (+) 876 WP_328311755.1 decarboxylating 6-phosphogluconate dehydrogenase -
  OG432_RS16855 (OG432_16850) recF 3721683..3722804 (+) 1122 WP_328311756.1 DNA replication/repair protein RecF Machinery gene
  OG432_RS16860 (OG432_16855) - 3722801..3723343 (+) 543 WP_328311757.1 DciA family protein -
  OG432_RS16865 (OG432_16860) gyrB 3723733..3725796 (+) 2064 WP_328311758.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 40418.94 Da        Isoelectric Point: 6.5133

>NTDB_id=649253 OG432_RS16855 WP_328311756.1 3721683..3722804(+) (recF) [Streptomyces sp. NBC_00442]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGANGQGKTNLVEAVGYLASLGSHRVSSDAPLVRMGAERAVIRAAVTQGERS
QLIELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAAVRSDYDRVLKQ
RNTLLKSAAMARRHGGRGMDLSTLDVWDQHLAQAGAELLAQRLDLIAALQPLADKAYDQLAPGGGPLTLEYKPSAPGTGH
TREELYGQLIAAFADVRKQEIERGVTLAGPHRDDLSLRLGELPAKGYASHGESWSYALALRLASYDLLRAEGNEPVLVLD
DVFAELDATRRERLAELVAPGEQVLVTAAVDDDVPGILAGVRYEVAAGEVIRA

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=649253 OG432_RS16855 WP_328311756.1 3721683..3722804(+) (recF) [Streptomyces sp. NBC_00442]
ATGCACGTCACCCATCTCTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTTCCGCTCGACCCGGGCGTCACCGC
TTTCGTGGGCGCCAACGGCCAGGGCAAGACCAACCTGGTCGAAGCCGTCGGCTACCTCGCCTCGCTCGGCAGCCACCGGG
TCTCGTCGGACGCGCCGCTGGTCCGCATGGGCGCCGAGCGCGCCGTGATCCGGGCCGCCGTCACCCAGGGCGAGCGCTCC
CAGCTGATCGAGCTCGAACTGAACCCCGGCCGCGCCAACCGTGCCCGCATCAACAGGTCCTCGCAGGTCAGACCCCGCGA
CGTGCTGGGGATCGTACGGACGGTGCTGTTCGCGCCGGAGGACCTCGCCCTGGTCAAGGGCGACCCTGGTGAGCGGCGCC
GCTTCCTCGACGAGCTGATCACCGCGCGCTCCCCCCGGATGGCGGCCGTGCGGTCCGACTACGACCGGGTGCTCAAGCAG
CGCAACACCCTCCTGAAGTCCGCCGCGATGGCCCGCCGGCACGGCGGCCGCGGCATGGACCTGTCGACGCTCGACGTGTG
GGACCAGCACCTTGCCCAGGCCGGCGCCGAACTGCTCGCCCAGCGCCTCGACCTGATCGCCGCCCTGCAGCCGCTCGCCG
ACAAGGCGTACGACCAACTGGCGCCGGGCGGCGGCCCGTTGACCCTGGAGTACAAGCCGTCCGCGCCCGGCACCGGGCAC
ACCCGCGAGGAGCTGTACGGGCAGCTCATCGCGGCTTTCGCGGACGTCCGCAAGCAGGAGATCGAGCGCGGGGTGACGCT
GGCGGGCCCGCACCGCGACGACCTGTCGCTGCGCCTGGGCGAGCTGCCGGCGAAGGGGTACGCGAGCCACGGCGAGTCGT
GGTCGTACGCGCTGGCGCTGCGCCTCGCCTCGTACGACCTGCTGCGGGCCGAGGGAAACGAGCCGGTCCTCGTGCTCGAC
GACGTGTTCGCCGAGCTGGACGCCACGCGCCGTGAGCGGCTCGCCGAACTGGTGGCGCCGGGCGAGCAGGTCCTGGTGAC
GGCCGCGGTGGACGACGACGTTCCGGGCATCCTGGCGGGTGTGCGGTACGAGGTCGCGGCGGGCGAGGTGATCCGGGCAT
GA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.244

94.638

0.362