Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG432_RS14880 Genome accession   NZ_CP107918
Coordinates   3304219..3304875 (+) Length   218 a.a.
NCBI ID   WP_328311419.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00442     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3299219..3309875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG432_RS14865 (OG432_14870) - 3300421..3301860 (-) 1440 WP_328311416.1 M1 family metallopeptidase -
  OG432_RS14870 (OG432_14875) - 3301974..3302558 (-) 585 WP_328311417.1 heme-binding protein -
  OG432_RS14875 (OG432_14880) - 3302795..3304222 (+) 1428 WP_328311418.1 sensor histidine kinase -
  OG432_RS14880 (OG432_14885) vraR 3304219..3304875 (+) 657 WP_328311419.1 response regulator transcription factor Regulator
  OG432_RS14885 (OG432_14890) - 3305252..3305752 (+) 501 WP_328311420.1 hypothetical protein -
  OG432_RS14890 (OG432_14895) - 3305825..3306508 (-) 684 WP_328311421.1 pentapeptide repeat-containing protein -
  OG432_RS14895 (OG432_14900) - 3306596..3307075 (-) 480 WP_328311422.1 GNAT family N-acetyltransferase -
  OG432_RS14900 (OG432_14905) - 3307332..3308048 (+) 717 WP_328311423.1 rhomboid-like protein -
  OG432_RS14905 (OG432_14910) - 3308163..3309371 (-) 1209 WP_328307487.1 IS701 family transposase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 22717.04 Da        Isoelectric Point: 6.3430

>NTDB_id=649249 OG432_RS14880 WP_328311419.1 3304219..3304875(+) (vraR) [Streptomyces sp. NBC_00442]
MNDDRARPAHPAHPVRILLCDDHAVVRAGLLALIGSEPDIEVAGEAGSGEEAVAAAAKLKPDVVLMDLQLGPGIDGVEAT
RRIATTGVHVLVLTTYDTDADITRAIAAGATGYLLKAERPEELFAAIRAAAQGRTTLSAPVAGRVMNQLRGASGPALTPR
ELDILAQLAGGLGNRDIARALFISEATVKTHLGRIYEKLGVDTRAGAVAVATERRLLT

Nucleotide


Download         Length: 657 bp        

>NTDB_id=649249 OG432_RS14880 WP_328311419.1 3304219..3304875(+) (vraR) [Streptomyces sp. NBC_00442]
ATGAACGACGACCGCGCCCGCCCCGCGCACCCCGCGCACCCCGTACGGATCCTGCTCTGCGACGACCACGCGGTGGTACG
CGCGGGTCTGCTCGCGCTCATCGGCAGCGAACCGGACATCGAGGTGGCCGGGGAGGCGGGCAGTGGCGAGGAGGCGGTGG
CCGCGGCGGCGAAGCTGAAGCCGGACGTGGTGCTGATGGACCTCCAGCTGGGGCCGGGCATCGACGGGGTGGAGGCGACG
CGCCGCATCGCCACGACCGGGGTGCACGTGCTGGTCCTGACGACCTACGACACGGACGCGGACATCACGCGGGCGATCGC
CGCGGGGGCGACGGGGTACCTCCTGAAGGCGGAGCGGCCCGAGGAGCTGTTCGCCGCGATCCGGGCCGCGGCGCAGGGAC
GCACGACGCTGTCCGCGCCGGTCGCGGGCCGCGTCATGAACCAGCTGCGCGGCGCGTCCGGCCCCGCGCTGACTCCCCGC
GAACTCGACATCCTGGCGCAGCTCGCGGGGGGTCTCGGCAACCGGGACATCGCGCGGGCTCTGTTCATCAGCGAGGCGAC
GGTGAAGACGCATCTGGGGCGGATCTACGAGAAGCTCGGCGTCGACACGCGGGCCGGCGCGGTAGCAGTAGCCACCGAAC
GCCGCCTCCTCACCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-211)

Response regulator receiver domain (Response_reg)

(17-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.647

94.954

0.367