Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L3Y35_RS10910 Genome accession   NZ_CP091330
Coordinates   2227689..2228285 (-) Length   198 a.a.
NCBI ID   WP_215402447.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain CRK3022     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2222689..2233285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3Y35_RS10895 helD 2222897..2224951 (-) 2055 WP_020324408.1 DNA helicase IV -
  L3Y35_RS10900 - 2225076..2225522 (+) 447 WP_002898425.1 YccF domain-containing protein -
  L3Y35_RS10905 yccS 2225540..2227675 (+) 2136 WP_004147856.1 YccS family putative transporter -
  L3Y35_RS10910 sxy/tfoX 2227689..2228285 (-) 597 WP_215402447.1 TfoX/Sxy family DNA transformation protein Regulator
  L3Y35_RS10915 sulA 2228634..2229143 (+) 510 WP_004893150.1 SOS-induced cell division inhibitor SulA -
  L3Y35_RS10920 ompA 2229496..2230566 (+) 1071 WP_002898408.1 porin OmpA -
  L3Y35_RS10925 matP 2230698..2231150 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  L3Y35_RS10930 - 2231336..2233093 (+) 1758 WP_020324406.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22490.03 Da        Isoelectric Point: 10.0350

>NTDB_id=649236 L3Y35_RS10910 WP_215402447.1 2227689..2228285(-) (sxy/tfoX) [Klebsiella pneumoniae strain CRK3022]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLSTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=649236 L3Y35_RS10910 WP_215402447.1 2227689..2228285(-) (sxy/tfoX) [Klebsiella pneumoniae strain CRK3022]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTCAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.282

98.485

0.505