Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG432_RS06885 Genome accession   NZ_CP107918
Coordinates   1558838..1559629 (+) Length   263 a.a.
NCBI ID   WP_328308779.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00442     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1553838..1564629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG432_RS06870 (OG432_06870) - 1553946..1554488 (+) 543 WP_328308773.1 TerD family protein -
  OG432_RS06875 (OG432_06875) - 1554685..1557588 (-) 2904 WP_328308775.1 vitamin B12-dependent ribonucleotide reductase -
  OG432_RS06880 (OG432_06880) nrdR 1557744..1558265 (-) 522 WP_328308777.1 transcriptional regulator NrdR -
  OG432_RS06885 (OG432_06885) dinR/lexA 1558838..1559629 (+) 792 WP_328308779.1 transcriptional repressor LexA Regulator
  OG432_RS06890 (OG432_06890) - 1559775..1561745 (-) 1971 WP_328308781.1 ATP-dependent DNA helicase -
  OG432_RS06895 (OG432_06895) - 1561783..1563822 (-) 2040 WP_328308783.1 IucA/IucC family siderophore biosynthesis protein -
  OG432_RS06900 (OG432_06900) - 1563893..1564531 (-) 639 WP_328315029.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28451.19 Da        Isoelectric Point: 7.4238

>NTDB_id=649219 OG432_RS06885 WP_328308779.1 1558838..1559629(+) (dinR/lexA) [Streptomyces sp. NBC_00442]
MTTTADTATITAQDRSQTRLEPVHAMNDAVTNQGGEAARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTAGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDNHIWLLPHNA
AYQPIPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 792 bp        

>NTDB_id=649219 OG432_RS06885 WP_328308779.1 1558838..1559629(+) (dinR/lexA) [Streptomyces sp. NBC_00442]
GTGACCACGACCGCAGACACTGCCACCATCACTGCCCAGGACCGCTCCCAGACCCGACTTGAGCCGGTGCATGCCATGAA
TGACGCAGTCACGAACCAGGGGGGGGAAGCCGCACGACCGGCCCGCTCCCTGCCCGGCCGGCCTCCAGGCATCCGGGCGG
ACAGCTCCGGGCTCACGGACCGGCAGCGACGAGTCATCGAAGTCATCCGGGACTCCGTGCAGCGGCGTGGCTACCCGCCG
TCGATGCGCGAGATCGGTCAGGCCGTCGGTCTCTCCAGCACCTCGTCCGTCGCCCATCAGCTGATGGCCCTGGAGCGCAA
GGGCTTCCTGCGCCGCGACCCGCATCGCCCGCGCGCCTACGAGGTACGGGGCTCCGACCAGCCGAGCAGCCAGCCCACCG
ACACGGCGGGCAAGCCGGCCGCCTCGTACGTGCCGCTGGTCGGCCGGATCGCCGCCGGTGGGCCGATCCTCGCCGAGGAG
TCGGTGGAGGACGTCTTCCCCCTCCCCCGCCAGCTGGTCGGCGACGGTGAGCTGTTCGTCCTGAAGGTCGTCGGCGACTC
GATGATCGAAGCCGCCATCTGTGACGGCGACTGGGTCACGGTCCGCCGCCAGCCCGTCGCCGAGAACGGCGACATCGTCG
CCGCGATGCTGGACGGCGAGGCCACGGTCAAACGCTTCAAGCGCGAGGACAACCACATCTGGCTGCTCCCTCACAACGCC
GCATATCAGCCGATTCCCGGCGACGACGCGACCATCCTGGGCAAGGTCGTGGCGGTCCTCCGGCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(145-257)

LexA DNA binding domain (LexA_DNA_bind)

(56-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

47.17

80.608

0.38