Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG432_RS05260 Genome accession   NZ_CP107918
Coordinates   1153249..1153890 (+) Length   213 a.a.
NCBI ID   WP_328308210.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00442     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1148249..1158890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG432_RS05240 (OG432_05245) - 1149208..1150011 (+) 804 WP_328308204.1 IclR family transcriptional regulator -
  OG432_RS05245 (OG432_05250) - 1150128..1150832 (-) 705 WP_328315004.1 ABC transporter ATP-binding protein -
  OG432_RS05250 (OG432_05255) - 1150892..1151935 (-) 1044 WP_328308206.1 FtsX-like permease family protein -
  OG432_RS05255 (OG432_05260) - 1152071..1153252 (+) 1182 WP_328308208.1 sensor histidine kinase -
  OG432_RS05260 (OG432_05265) vraR 1153249..1153890 (+) 642 WP_328308210.1 response regulator transcription factor Regulator
  OG432_RS05265 (OG432_05270) - 1153999..1154325 (+) 327 WP_328308212.1 hypothetical protein -
  OG432_RS05270 (OG432_05275) - 1154335..1155144 (+) 810 WP_328308214.1 papain-like cysteine protease family protein -
  OG432_RS05275 (OG432_05280) - 1155153..1155713 (+) 561 WP_328308216.1 hypothetical protein -
  OG432_RS05280 (OG432_05285) - 1156185..1157672 (+) 1488 WP_328308218.1 PLP-dependent aminotransferase family protein -
  OG432_RS05285 (OG432_05290) - 1157779..1158084 (-) 306 WP_328308220.1 DUF5955 family protein -
  OG432_RS05290 (OG432_05295) - 1158249..1158884 (+) 636 WP_328308222.1 nucleotidyltransferase family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22162.47 Da        Isoelectric Point: 6.6500

>NTDB_id=649214 OG432_RS05260 WP_328308210.1 1153249..1153890(+) (vraR) [Streptomyces sp. NBC_00442]
MSAAPIRLLLADDHPIVRAGLRAVLDTEPGLAVTGEAATAERAVELAASGAYDVVLMDLQFGAGMHGAEATAKIMGRPGA
PRVLVLTTYDTDADILAAVEAGAAGYLLKDAPPEELAAAVRTAASGQSALAPAVAHRLMDRMRTPAEALTRRELEVLQLV
GDGLSNQQISKQLFLSQATVKSHLVHIYAKLGVDSRTSAVAAASARRLIRQPG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=649214 OG432_RS05260 WP_328308210.1 1153249..1153890(+) (vraR) [Streptomyces sp. NBC_00442]
GTGAGCGCGGCCCCCATCCGGCTGCTGCTCGCCGACGACCATCCCATCGTGCGGGCCGGGCTGCGCGCGGTCCTCGACAC
CGAGCCGGGCCTCGCGGTGACCGGGGAGGCCGCGACCGCCGAGCGCGCGGTGGAGCTGGCCGCCTCCGGCGCGTACGACG
TCGTCCTGATGGACCTCCAGTTCGGGGCCGGGATGCACGGCGCCGAGGCGACCGCGAAGATCATGGGGCGGCCGGGCGCC
CCGCGTGTCCTGGTCCTCACCACGTACGACACGGACGCGGACATCCTCGCGGCGGTGGAGGCGGGGGCCGCCGGCTATCT
GCTCAAGGACGCCCCGCCCGAGGAGCTCGCGGCTGCGGTACGCACCGCCGCCTCGGGCCAGTCGGCGCTCGCCCCGGCCG
TGGCGCACCGGCTCATGGACCGGATGCGGACGCCCGCCGAGGCGCTGACGCGGCGCGAGCTGGAGGTGCTCCAGCTCGTC
GGCGACGGTCTCTCCAACCAGCAGATCAGCAAGCAGCTGTTCCTGAGCCAGGCCACCGTCAAGTCCCATCTCGTCCATAT
CTACGCCAAGTTGGGGGTGGACTCGCGCACATCGGCGGTCGCCGCCGCGAGCGCGCGCCGTCTGATCCGCCAACCGGGCT
GA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(9-120)

Bacterial regulatory proteins, luxR family (GerE)

(148-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.019

97.653

0.362