Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   OG432_RS02695 Genome accession   NZ_CP107918
Coordinates   584907..587261 (+) Length   784 a.a.
NCBI ID   WP_328307308.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00442     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 579907..592261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG432_RS02670 (OG432_02670) - 580708..581199 (-) 492 WP_328307300.1 peptidylprolyl isomerase -
  OG432_RS02675 (OG432_02675) - 581284..582534 (-) 1251 WP_328314976.1 extracellular solute-binding protein -
  OG432_RS02680 (OG432_02680) - 582793..583014 (+) 222 WP_328307302.1 dodecin -
  OG432_RS02685 (OG432_02685) - 583123..583611 (-) 489 WP_328307304.1 HAD family acid phosphatase -
  OG432_RS02690 (OG432_02690) - 583700..584731 (+) 1032 WP_328307306.1 MsnO8 family LLM class oxidoreductase -
  OG432_RS02695 (OG432_02695) uvrA 584907..587261 (+) 2355 WP_328307308.1 excinuclease ABC subunit UvrA Machinery gene
  OG432_RS02700 (OG432_02700) - 587390..589096 (+) 1707 WP_328307310.1 right-handed parallel beta-helix repeat-containing protein -
  OG432_RS02705 (OG432_02705) - 589093..589500 (+) 408 WP_328307312.1 hypothetical protein -
  OG432_RS02710 (OG432_02710) - 589746..591494 (+) 1749 WP_328307314.1 carbohydrate binding domain-containing protein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 83884.10 Da        Isoelectric Point: 6.9361

>NTDB_id=649211 OG432_RS02695 WP_328307308.1 584907..587261(+) (uvrA) [Streptomyces sp. NBC_00442]
MHNPSTPSIASDPFVRVRGAREHNLRGVDVDIPRDCLAVFTGVSGSGKSSLAFGTIYAEAQRRYFESVAPYARRLIHQVG
APKVGEISGLPPAVSLEQRRSAPSSRSSVGTVTTLSNSLRMLFSRAGRYPAGAERLDSDAFSPNTAVGACPGCQGLGRVH
RTSEELLVPDPSLSIREGAIAAWPGAWQGKNLRDVLDTLGYDVDRPWGELDPKDRDWILFTDEQPVVTVHPVRDAGRIQR
PYQGTYFSARRYVMKTFAESRSQTLRAKAERFLTATDCPVCGGTRLRPEALAVTFAGRTIADLVALPLTALARLLRDTDG
GPTAAAVTGDLLSRIAPVVELGLGYLSLDRTAPTLSAGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTEALLTVLD
RLKAAGNSVFVVEHHLDVMRNADWLVDVGPLAGEHGGRVLHSGPPTGLAHVEESATRRYLFDRAPAPRRTVREPRGWLEL
TGVTRHNLRGVDAVFPLGVFTAVTGVSGSGKSTLVDELDDQLPGVGRLVRVDQKPIGRTPRSNLATYTGLFDVVRKLFAG
TDEAKARGYKAGRFSFNVAGGRCETCQGEGFVSVELLFLPSTYAPCPDCHGARYNAETLEVTHRGRTIAEVLDLTVEAAA
EVFAGTPAAARSLATLLDVGLGYLRLGQPATELSGGEAQRIKLATELQRTHRDHTLYVLDEPTTGLHPADVEILLRQLHG
LVDAGHSVIVVEHDMTVVAGADWMLDLGPAGGDEGGRVVAAGPPSEVADAGAGRTAPYLAKVLA

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=649211 OG432_RS02695 WP_328307308.1 584907..587261(+) (uvrA) [Streptomyces sp. NBC_00442]
ATGCACAACCCCTCCACCCCCTCCATCGCCTCCGACCCGTTCGTCCGTGTCCGTGGCGCCCGCGAGCACAATCTGCGGGG
GGTGGATGTCGACATTCCGCGTGACTGCCTCGCGGTGTTCACCGGCGTCTCCGGGTCGGGGAAGTCCTCGCTCGCGTTCG
GCACGATCTACGCCGAGGCCCAGCGGCGTTACTTCGAGTCGGTCGCGCCCTACGCACGCCGGCTGATCCATCAGGTGGGC
GCGCCGAAGGTCGGCGAGATCTCCGGGCTGCCACCCGCCGTCTCCCTCGAACAGCGCCGCTCGGCGCCCTCGTCCCGTTC
ATCGGTCGGCACGGTGACCACGCTCTCCAACTCGCTGCGGATGCTCTTCTCCCGGGCCGGCCGCTATCCGGCGGGCGCCG
AGCGCCTCGACTCGGACGCGTTCTCGCCCAACACGGCCGTCGGCGCCTGCCCCGGGTGCCAGGGGCTCGGCCGTGTCCAC
CGCACCAGTGAGGAGCTGCTCGTCCCCGATCCCTCGCTCTCGATCCGCGAGGGCGCCATCGCCGCGTGGCCGGGCGCCTG
GCAGGGCAAGAACCTGCGCGATGTGCTCGACACCCTCGGGTACGACGTGGACCGGCCCTGGGGGGAGCTCGACCCGAAGG
ACCGGGACTGGATCCTTTTCACCGACGAGCAACCGGTGGTCACGGTGCACCCGGTGCGGGACGCCGGCCGCATCCAACGG
CCCTACCAGGGCACGTACTTCAGCGCACGGCGCTATGTGATGAAGACGTTCGCGGAGAGCAGGAGCCAGACGCTGCGGGC
GAAGGCCGAGCGTTTTCTGACCGCGACCGACTGCCCGGTCTGCGGCGGCACCCGGCTGCGTCCCGAGGCGCTCGCCGTCA
CGTTCGCGGGCCGTACCATCGCCGACCTGGTGGCGCTTCCACTGACCGCGCTGGCCCGGTTGCTGCGCGACACCGACGGC
GGTCCGACCGCCGCCGCCGTCACCGGCGACCTCCTGTCCCGCATCGCCCCGGTCGTCGAGCTGGGCCTCGGCTATCTCAG
CCTGGACCGCACCGCACCCACGCTCTCGGCGGGCGAGCTGCAGCGCCTGCGGCTCGCCACCCAGCTGCGCTCGGGGCTCT
TCGGCGTCGTGTACGTCCTGGACGAGCCCTCGGCGGGGCTGCATCCGGCCGACACCGAGGCGCTGCTCACGGTGCTCGAC
CGGCTGAAGGCCGCGGGCAATTCGGTGTTCGTGGTCGAGCACCACCTGGATGTGATGCGGAACGCGGACTGGCTGGTCGA
CGTGGGCCCGCTGGCCGGCGAGCACGGCGGCCGTGTCCTGCACAGCGGGCCGCCGACCGGGCTGGCCCACGTCGAGGAGT
CGGCGACCCGGCGCTACCTCTTCGACCGCGCCCCGGCGCCGCGCCGCACCGTGCGCGAGCCGCGCGGCTGGCTGGAGCTG
ACCGGCGTGACCCGGCACAATCTGCGCGGTGTCGACGCGGTGTTCCCGCTGGGGGTGTTCACCGCGGTGACCGGCGTCTC
GGGCTCGGGGAAGTCCACGCTCGTCGACGAGCTGGACGATCAACTGCCGGGCGTCGGACGGCTGGTGAGGGTGGATCAGA
AACCCATCGGCCGGACACCGCGTTCCAACCTCGCCACGTACACCGGCCTCTTCGACGTCGTGCGCAAGCTCTTCGCCGGG
ACCGACGAGGCGAAGGCGCGCGGCTACAAGGCGGGCCGGTTCTCCTTCAACGTGGCGGGCGGCCGGTGCGAGACCTGCCA
GGGCGAGGGATTCGTTTCGGTGGAGCTGCTGTTCCTGCCGAGTACGTACGCGCCCTGCCCGGACTGTCATGGCGCGCGCT
ACAACGCCGAGACGCTCGAGGTCACCCATCGGGGGCGCACCATCGCCGAGGTGCTCGACCTGACGGTGGAGGCCGCGGCC
GAGGTCTTCGCCGGCACCCCCGCCGCGGCGCGCAGCCTCGCGACGCTGCTCGATGTCGGGCTGGGCTATCTGCGGCTCGG
CCAGCCCGCCACGGAGCTGTCCGGTGGGGAGGCCCAACGCATCAAGCTGGCAACGGAGTTGCAGCGCACGCATCGCGATC
ACACCCTGTACGTGCTGGACGAACCGACGACGGGTCTGCACCCGGCCGACGTCGAGATCCTGCTGCGCCAGCTGCACGGT
CTGGTGGACGCCGGCCACTCGGTGATCGTCGTGGAGCACGACATGACCGTGGTGGCGGGCGCCGACTGGATGCTCGACCT
GGGCCCGGCCGGCGGCGACGAGGGCGGCCGTGTGGTGGCCGCCGGCCCCCCGTCCGAGGTGGCCGACGCGGGCGCCGGGC
GCACGGCGCCCTATCTGGCCAAGGTGCTGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(490-703)

UvrA DNA-binding domain (UvrA_DNA-bind)

(165-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

42.09

90.306

0.38
  uvrA Streptococcus pneumoniae TIGR4

42.09

90.306

0.38
  uvrA Streptococcus pneumoniae D39

42.09

90.306

0.38