Detailed information    

insolico Bioinformatically predicted

Overview

Name   cipB   Type   Regulator
Locus tag   H020_RS0102660 Genome accession   NZ_AKVY01000001
Coordinates   517736..517885 (+) Length   49 a.a.
NCBI ID   WP_001818346.1    Uniprot ID   -
Organism   Streptococcus pneumoniae TIGR4     
Function   indirect induction of ComX; activation of comRS system (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 516065..516869 517736..517885 flank 867


Gene organization within MGE regions


Location: 516065..517885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H020_RS12500 - 516065..516869 (+) 805 WP_100214365.1 IS5 family transposase -
  H020_RS0102650 blpM 517019..517273 (+) 255 WP_000379879.1 two-peptide bacteriocin subunit BlpM -
  H020_RS0102655 blpN 517289..517492 (+) 204 WP_001099492.1 two-peptide bacteriocin subunit BlpN -
  H020_RS0102660 cipB 517736..517885 (+) 150 WP_001818346.1 bacteriocin-like peptide BlpO Regulator

Sequence

Protein


Download         Length: 49 a.a.        Molecular weight: 5134.91 Da        Isoelectric Point: 3.9133

>NTDB_id=64919 H020_RS0102660 WP_001818346.1 517736..517885(+) (cipB) [Streptococcus pneumoniae TIGR4]
MDTKMMSQFAVMDNEMLACVEGGDIDWGRKISCAAGVAYGAIDGCATTV

Nucleotide


Download         Length: 150 bp        

>NTDB_id=64919 H020_RS0102660 WP_001818346.1 517736..517885(+) (cipB) [Streptococcus pneumoniae TIGR4]
ATGGATACAAAAATGATGTCACAATTTGCAGTTATGGATAATGAAATGCTTGCTTGCGTTGAAGGTGGAGATATTGATTG
GGGAAGAAAAATTAGTTGTGCAGCAGGGGTTGCATATGGCGCAATTGATGGGTGTGCAACAACGGTTTGA

Domains

Predicted by InterproScan.

Bacteriocin class II with double-glycine leader peptide (Bacteriocin_IIc)

(6-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cipB Streptococcus mutans UA159

51.02

100

0.51

Multiple sequence alignment