Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHO27_RS28110 Genome accession   NZ_CP107917
Coordinates   6213984..6214643 (+) Length   219 a.a.
NCBI ID   WP_328427743.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00443     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6208984..6219643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHO27_RS28095 (OHO27_28075) - 6209745..6210443 (+) 699 WP_328427740.1 TerB family tellurite resistance protein -
  OHO27_RS28100 (OHO27_28080) - 6210597..6212693 (+) 2097 WP_328427741.1 MMPL family transporter -
  OHO27_RS28105 (OHO27_28085) - 6212740..6213987 (+) 1248 WP_328427742.1 histidine kinase -
  OHO27_RS28110 (OHO27_28090) vraR 6213984..6214643 (+) 660 WP_328427743.1 response regulator transcription factor Regulator
  OHO27_RS28115 (OHO27_28095) - 6214683..6215888 (+) 1206 WP_328427744.1 sialidase family protein -
  OHO27_RS28120 (OHO27_28100) - 6215931..6216866 (-) 936 WP_328430581.1 dihydrodipicolinate synthase family protein -
  OHO27_RS28125 (OHO27_28105) - 6216866..6217885 (-) 1020 WP_328427745.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23286.79 Da        Isoelectric Point: 4.4480

>NTDB_id=649185 OHO27_RS28110 WP_328427743.1 6213984..6214643(+) (vraR) [Streptomyces sp. NBC_00443]
MIRVLLADDQTLVREAFAMLVESAPDMEVVGQAATGREAAELARGTRADLVVMDIRMPDLDGIEATRLIAADEDLAGVRV
LVLTTYDTDENIVDALRAGASGFLVKDTRPAELLDAIRTVAAGEALLSPGPTARLIERFLRSPSAPTTGGPECLSERERE
VLTLVARGLNNTEIAEALGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGMVTPGIL

Nucleotide


Download         Length: 660 bp        

>NTDB_id=649185 OHO27_RS28110 WP_328427743.1 6213984..6214643(+) (vraR) [Streptomyces sp. NBC_00443]
ATGATCCGCGTCCTGCTCGCGGACGACCAGACGCTCGTGCGGGAGGCGTTCGCCATGCTCGTCGAGTCGGCCCCCGACAT
GGAGGTCGTCGGCCAGGCGGCGACCGGCCGGGAGGCCGCGGAACTGGCCCGCGGCACCCGCGCCGACCTCGTAGTGATGG
ACATCCGCATGCCCGACCTCGACGGCATCGAGGCGACCCGCCTGATCGCGGCCGACGAGGACCTGGCCGGGGTGCGGGTG
CTGGTCCTCACCACGTACGACACCGACGAGAACATCGTGGACGCGCTGCGCGCCGGCGCCTCCGGATTCCTCGTCAAGGA
CACCCGCCCGGCCGAACTCCTCGACGCCATCCGCACGGTGGCCGCGGGCGAGGCGCTCCTGTCGCCGGGGCCGACCGCAC
GGCTGATCGAGCGGTTCCTGCGCAGCCCCTCCGCCCCCACGACAGGCGGGCCCGAATGTCTGTCCGAACGTGAACGCGAA
GTGCTGACGCTGGTCGCCCGCGGGCTCAACAACACGGAAATCGCGGAAGCATTGGGGCTCAGCCCGCTGACGGCGAAGAC
ACACGTCAGCCGCATCATGGGGAAGCTGGGGGCCCGCGACCGGGCGCAGTTGGTCATCGTCGCCTATGAGTCAGGGATGG
TGACACCGGGGATCCTGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(4-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.089

97.26

0.361