Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OHO27_RS24090 Genome accession   NZ_CP107917
Coordinates   5298351..5299349 (+) Length   332 a.a.
NCBI ID   WP_328427062.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00443     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5293351..5304349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHO27_RS24065 (OHO27_24065) - 5293642..5294286 (+) 645 WP_328427057.1 helix-turn-helix domain-containing protein -
  OHO27_RS24070 (OHO27_24070) - 5294458..5295999 (+) 1542 WP_328427058.1 MFS transporter -
  OHO27_RS24075 (OHO27_24075) - 5296186..5296722 (-) 537 WP_328427059.1 MarR family transcriptional regulator -
  OHO27_RS24080 (OHO27_24080) - 5296841..5297629 (+) 789 WP_328427060.1 class III extradiol ring-cleavage dioxygenase -
  OHO27_RS24085 (OHO27_24085) - 5297651..5298181 (-) 531 WP_328427061.1 N-acetyltransferase family protein -
  OHO27_RS24090 (OHO27_24090) rpoS 5298351..5299349 (+) 999 WP_328427062.1 sigma-70 family RNA polymerase sigma factor Regulator
  OHO27_RS24095 (OHO27_24095) - 5299781..5300377 (+) 597 WP_328430526.1 TetR family transcriptional regulator -
  OHO27_RS24100 (OHO27_24100) - 5300631..5301605 (-) 975 WP_328427063.1 YafY family protein -
  OHO27_RS24105 (OHO27_24105) - 5301668..5303194 (+) 1527 WP_328427064.1 MFS transporter -
  OHO27_RS24110 (OHO27_24110) - 5303381..5304142 (+) 762 WP_328427065.1 DeoR/GlpR family DNA-binding transcription regulator -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37224.02 Da        Isoelectric Point: 5.3901

>NTDB_id=649175 OHO27_RS24090 WP_328427062.1 5298351..5299349(+) (rpoS) [Streptomyces sp. NBC_00443]
MATRAVARRQSATGGTVDKARSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFARQVLDGHEEARAD
ATREELEALVADAERAKDIFIRSNLRLVVAVARRYPRSGLPLLDLVQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPAEIAAELGSNPDRVVDVLDWARDPVSLNMPVDDEGETQF
GDLLEDTSAASPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARSTGFDAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=649175 OHO27_RS24090 WP_328427062.1 5298351..5299349(+) (rpoS) [Streptomyces sp. NBC_00443]
ATGGCAACCCGTGCCGTCGCCCGTCGTCAGTCCGCCACCGGCGGGACCGTCGACAAGGCACGCAGTGTTCGCGCCCATGG
TGGCGAGATCGCGGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGCACGCCGCTTCTCGACGCAGCCAAAG
AGGTCGAGCTGTCACAGATCATCGAGGCGGGTGTGTTCGCAAGGCAGGTCCTCGACGGCCACGAGGAGGCCAGGGCGGAC
GCCACCCGCGAGGAACTGGAGGCCCTGGTCGCCGACGCGGAGCGGGCCAAGGACATCTTCATCCGCTCCAACCTCCGCTT
GGTCGTCGCGGTGGCCCGCCGCTACCCGCGCAGCGGCCTGCCCCTCCTCGACCTGGTCCAGGAGGGTAACGCCGGCCTGG
TGCGTGCGGTGGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCCACGTACGCCACCTGGTGGATCCGCCAGGCGATC
ACCCGCTCCATAGCCGACCAGTCCCGCACCATCCGCCTCCCCGTCCACCTGGTCGAGGAGCTGGGCCGCATCCGCCGAGT
GCAGCGCGAGTTCAACCGCGAGCACGGCCGCGACCCGGAGCCCGCGGAGATCGCCGCCGAGCTCGGTTCGAACCCGGACC
GCGTGGTGGACGTCCTGGACTGGGCCCGCGACCCGGTCTCGCTGAACATGCCGGTGGACGACGAGGGCGAGACCCAGTTC
GGCGACCTGCTGGAGGACACCTCCGCGGCCTCCCCGGAGCAGTCGGTCCTCACCCTCCTGCGCAGCGAGGAGCTGGACGA
CCTGATCGGCCGCCTCGACCAGCGCACCGCGTCCATCATCAAGATGCGGTACGGCATCGAGGACGGTCGCGAGCGCACCC
TGACCGAGGTCGGCAAGGAACACGGCCTCACCCGCGAGCGCATCCGGCAGATCGAGAAGCACGCGCTGCTGGAGCTGAAG
AAGCTGGCGCGCAGCACCGGTTTCGACGCCGCCGCGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.134

90.06

0.361