Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L2Y28_RS07550 Genome accession   NZ_CP091319
Coordinates   1608576..1609202 (+) Length   208 a.a.
NCBI ID   WP_022647658.1    Uniprot ID   A0A431SK42
Organism   Enterobacter sp. JH25     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1603576..1614202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y28_RS07530 - 1603975..1605735 (-) 1761 WP_236919580.1 Lon protease family protein -
  L2Y28_RS07535 matP 1605922..1606374 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  L2Y28_RS07540 ompA 1606440..1607492 (-) 1053 WP_017694761.1 porin OmpA -
  L2Y28_RS07545 sulA 1607849..1608358 (-) 510 WP_032610196.1 SOS-induced cell division inhibitor SulA -
  L2Y28_RS07550 sxy/tfoX 1608576..1609202 (+) 627 WP_022647658.1 TfoX/Sxy family DNA transformation protein Regulator
  L2Y28_RS07555 yccS 1609159..1611321 (-) 2163 WP_022647659.1 YccS family putative transporter -
  L2Y28_RS07560 - 1611340..1611786 (-) 447 WP_022647660.1 YccF domain-containing protein -
  L2Y28_RS07565 helD 1611909..1613963 (+) 2055 WP_022647661.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23940.50 Da        Isoelectric Point: 9.4592

>NTDB_id=649144 L2Y28_RS07550 WP_022647658.1 1608576..1609202(+) (sxy/tfoX) [Enterobacter sp. JH25]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSVLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=649144 L2Y28_RS07550 WP_022647658.1 1608576..1609202(+) (sxy/tfoX) [Enterobacter sp. JH25]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGTGAGCTTTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCGTCCTCTGTTCTGACCCTGATGAAACGAGGACGTCCTGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCGATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A431SK42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572