Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA71_RS47645 Genome accession   NZ_CP107916
Coordinates   10387882..10388544 (-) Length   220 a.a.
NCBI ID   WP_210578132.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00444     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 10382882..10393544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA71_RS47620 (OHA71_47615) - 10383229..10383801 (-) 573 WP_328442138.1 GNAT family N-acetyltransferase -
  OHA71_RS47625 (OHA71_47620) - 10383845..10384435 (-) 591 WP_328442139.1 TetR/AcrR family transcriptional regulator -
  OHA71_RS47630 (OHA71_47625) - 10384610..10385519 (+) 910 Protein_9435 chlorophyllase -
  OHA71_RS47635 (OHA71_47630) - 10385655..10386869 (+) 1215 WP_328442140.1 MFS transporter -
  OHA71_RS47640 (OHA71_47635) - 10386880..10387734 (+) 855 WP_328442141.1 alpha/beta hydrolase-fold protein -
  OHA71_RS47645 (OHA71_47640) vraR 10387882..10388544 (-) 663 WP_210578132.1 response regulator transcription factor Regulator
  OHA71_RS47650 (OHA71_47645) - 10388519..10389691 (-) 1173 WP_328442142.1 histidine kinase -
  OHA71_RS47655 (OHA71_47650) - 10389867..10392137 (+) 2271 WP_328442143.1 MMPL family transporter -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23394.18 Da        Isoelectric Point: 5.3360

>NTDB_id=649126 OHA71_RS47645 WP_210578132.1 10387882..10388544(-) (vraR) [Streptomyces sp. NBC_00444]
MSIRVLVADDQTIIRTGLRIMLNAQPGIEVVGEAADGQEAVRLARELRPDVCLFDIRMPVLDGLEATRLVAGPGVADPLA
VVVITTFDLDEYVYGALRAGARGFLLKDTGPDLLAQAVRSASGGEALIAPSVTVRLLQAFADLPAGRPVAQPVSPVTARE
EQVLLAVARGLTNTEIADALHISLSTVKTHLASLMAKLGARNRVEIAMWAYETRRILPGT

Nucleotide


Download         Length: 663 bp        

>NTDB_id=649126 OHA71_RS47645 WP_210578132.1 10387882..10388544(-) (vraR) [Streptomyces sp. NBC_00444]
GTGTCCATTCGCGTCCTCGTCGCTGACGACCAGACGATCATCCGCACCGGGTTGCGGATCATGCTGAACGCCCAGCCCGG
CATCGAGGTGGTCGGCGAGGCCGCCGACGGACAGGAAGCGGTACGTCTGGCCCGCGAACTGCGCCCCGACGTCTGTCTGT
TCGACATCCGCATGCCCGTACTCGACGGGCTCGAGGCCACCCGGCTGGTCGCCGGCCCGGGCGTCGCCGATCCGCTGGCC
GTGGTCGTCATCACCACGTTCGACCTCGACGAGTACGTCTACGGCGCGCTGCGTGCCGGCGCCCGCGGATTCCTCCTCAA
GGACACGGGACCAGACCTTCTGGCCCAGGCCGTACGGTCGGCGTCCGGCGGTGAGGCGCTCATCGCGCCCAGCGTCACCG
TCCGTCTGCTCCAGGCATTCGCGGACCTGCCCGCCGGCCGGCCCGTGGCCCAGCCGGTCTCCCCCGTCACCGCCCGCGAG
GAGCAGGTGCTCCTCGCCGTCGCTCGCGGGCTGACCAACACCGAGATCGCCGATGCACTGCACATCAGCCTCAGCACGGT
GAAGACACATCTGGCCAGCCTGATGGCCAAACTCGGCGCCCGCAACCGGGTCGAGATCGCGATGTGGGCCTACGAAACGC
GCCGTATCCTCCCCGGAACCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.5

98.182

0.368