Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L2Y89_RS22995 Genome accession   NZ_CP091311
Coordinates   4866546..4867916 (-) Length   456 a.a.
NCBI ID   WP_009681282.1    Uniprot ID   A0A7W2JQ30
Organism   Pseudomonas juntendi strain 18091276     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4861546..4872916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y89_RS22980 (L2Y89_22980) - 4861696..4863762 (-) 2067 WP_009682653.1 carbon starvation CstA family protein -
  L2Y89_RS22985 (L2Y89_22985) - 4863929..4864312 (+) 384 WP_029886891.1 PilZ domain-containing protein -
  L2Y89_RS22990 (L2Y89_22990) - 4864555..4866075 (+) 1521 WP_009682651.1 nucleobase:cation symporter-2 family protein -
  L2Y89_RS22995 (L2Y89_22995) radA 4866546..4867916 (-) 1371 WP_009681282.1 DNA repair protein RadA Machinery gene
  L2Y89_RS23000 (L2Y89_23000) mscL 4868093..4868512 (+) 420 WP_009681281.1 large-conductance mechanosensitive channel protein MscL -
  L2Y89_RS23005 (L2Y89_23005) - 4868584..4869360 (-) 777 WP_009681280.1 ferredoxin--NADP reductase -
  L2Y89_RS23010 (L2Y89_23010) - 4869573..4870280 (+) 708 WP_009681279.1 autoinducer binding domain-containing protein -
  L2Y89_RS23015 (L2Y89_23015) - 4870377..4871501 (+) 1125 WP_009681278.1 methyltransferase -
  L2Y89_RS23020 (L2Y89_23020) - 4871885..4872040 (-) 156 WP_009682264.1 DUF2474 domain-containing protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48785.29 Da        Isoelectric Point: 7.1315

>NTDB_id=649109 L2Y89_RS22995 WP_009681282.1 4866546..4867916(-) (radA) [Pseudomonas juntendi strain 18091276]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSSGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTE
LDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGMPALYVTGEESQQQVAMRSRRLGLPQDKLKVMTETCIETII
ATARVEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYF
EGESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHL
ANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLS
GEVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=649109 L2Y89_RS22995 WP_009681282.1 4866546..4867916(-) (radA) [Pseudomonas juntendi strain 18091276]
ATGGCCAAGGCCAAGCGCATGTATGGCTGCACCGAGTGCGGCGCGACCTTCCCCAAATGGGCCGGCCAGTGTGGTGAATG
CGGGGCCTGGAACACCCTGGTCGAAACCATGATCGAAAGCGGCGGTGCCGCTGCGCCCAGCAGTGGCCGCGCCGGCTGGA
CCGGGCAGCAGGCACAGATCAAGACCCTGGCCGAAGTCAGCGTCGAGGAGATCCCCCGTTTCACCACCAGCAGCACCGAG
CTCGACCGTGTGTTGGGTGGCGGCCTGGTAGACGGCTCGGTGGTGCTGATTGGTGGCGACCCTGGTATCGGCAAGTCGAC
CATCCTGTTGCAGACCCTGTGCAATATCGCCGTGGGCATGCCGGCACTGTATGTCACTGGCGAGGAATCGCAGCAACAGG
TGGCCATGCGCTCGCGCCGCCTGGGCCTGCCCCAGGACAAGCTCAAGGTCATGACCGAAACCTGCATCGAGACGATCATT
GCCACGGCACGTGTCGAAAAACCGCGGGTAATGGTGATCGACTCCATCCAGACCATCTTCACCGAGCAGTTGCAGTCAGC
CCCTGGTGGCGTTGCCCAGGTGCGTGAAAGCACGGCGTTGCTGGTGCGTTATGCCAAGCAGAGCGGCACGGCCATCTTCC
TGGTCGGCCATGTCACCAAGGAGGGCTCGCTGGCCGGCCCGCGGGTGCTGGAGCACATGGTCGATACCGTGTTGTATTTC
GAGGGCGAGTCCGACGGCCGCCTGCGCTTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCCGTCAACGAGCTGGGCGTGTT
CGGCATGACCGACCGCGGCTTGAAGGAGGTATCCAACCCGTCGGCGATCTTCCTCAACCGTACCCAGGAGGAAGTGCCGG
GCAGCGTGGTGATGGCCACCTGGGAAGGCACCCGGCCCATGCTGGTCGAGGTGCAGGCGCTGGTGGACGACAGCCACCTG
GCCAACCCGCGCCGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCCATGCTGCTGGCGGTACTGCACCGCCACGGCGG
TATACCCACCCACGACCAGGACGTGTTCCTCAATGTGGTGGGCGGGGTCAAGGTGCTGGAAACCGCTTCGGACCTGGCGC
TGCTGGCGGCGGTGATGTCCAGCCTGCGCAATCGGCCACTGGCCCATGGCCTGCTGGTGTTCGGCGAGATCGGCTTGTCG
GGCGAGGTACGCCCGGTGCCAAGCGGGCAGGAGCGCTTGAAGGAAGCGGCCAAGCACGGCTTCAAGCGGGCGATCGTGCC
CAAGGGCAATGCGCCGAAGGAGCCGCCAGCGGGGCTGCAGGTCATTGCCGTGACCCGGCTGGAGCAGGCCCTGGATGCAT
TGTTCGAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(355-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2JQ30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.487
  radA Streptococcus pneumoniae Rx1

46.087

100

0.465
  radA Streptococcus pneumoniae R6

46.087

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.087

100

0.465
  radA Streptococcus pneumoniae D39

46.087

100

0.465
  radA Streptococcus mitis SK321

46.272

100

0.463
  radA Streptococcus mitis NCTC 12261

46.053

100

0.461