Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHA71_RS34590 Genome accession   NZ_CP107916
Coordinates   7541082..7542815 (-) Length   577 a.a.
NCBI ID   WP_328364892.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00444     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7536082..7547815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA71_RS34580 (OHA71_34570) - 7537692..7538966 (+) 1275 WP_328364886.1 RNA polymerase sigma factor -
  OHA71_RS34585 (OHA71_34575) rcrQ 7539154..7541082 (-) 1929 WP_328440788.1 ABC transporter ATP-binding protein Regulator
  OHA71_RS34590 (OHA71_34580) rcrP 7541082..7542815 (-) 1734 WP_328364892.1 ABC transporter ATP-binding protein Regulator
  OHA71_RS34595 (OHA71_34585) - 7543024..7544478 (-) 1455 WP_328364895.1 FGGY family carbohydrate kinase -
  OHA71_RS34600 (OHA71_34590) - 7544630..7544929 (-) 300 WP_210574173.1 YtxH domain-containing protein -
  OHA71_RS34620 (OHA71_34610) - 7545848..7546021 (+) 174 WP_328440789.1 prevent-host-death family protein -
  OHA71_RS34625 (OHA71_34615) - 7546009..7546407 (+) 399 WP_328440790.1 PIN domain-containing protein -
  OHA71_RS34630 (OHA71_34620) - 7546533..7547336 (+) 804 WP_328440791.1 NmrA family NAD(P)-binding protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62681.00 Da        Isoelectric Point: 6.1301

>NTDB_id=649092 OHA71_RS34590 WP_328364892.1 7541082..7542815(-) (rcrP) [Streptomyces sp. NBC_00444]
MLIRLLRTYLRPYRKPIAVLVLLQFLQTCATLYLPTLNADIIDNGVVNGDTGYILSYGALMIGISLVQVVCNIGAVYYGA
RTAAALGRDVRGAVFDRVQSFSAREVGHFGAPTLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIVLALGLDVPLSGV
LVAVVPVLGICVTLIVRRLRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDEYEQQRFRHANAELTEMSLATGKLLAL
MFPMVMTVVNLSSIAVVWFGAHRIDSGGMEIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PTAPVVKLLRHGHLEMRGAGFRYPGAEEPVLKAVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVAVA
SLEPKLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKEFVERLEGGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETAEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=649092 OHA71_RS34590 WP_328364892.1 7541082..7542815(-) (rcrP) [Streptomyces sp. NBC_00444]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAGAAAACCCATCGCCGTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACGCTGAACGCCGACATCATCGACAACGGTGTCGTGAACGGAGACACCGGCTACA
TCCTTTCCTACGGCGCCCTGATGATCGGCATCTCGCTGGTGCAGGTCGTCTGCAACATCGGTGCCGTGTACTACGGCGCC
CGTACGGCGGCGGCGCTCGGCCGTGACGTCCGGGGTGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGTGAGGTCGG
TCATTTCGGGGCGCCCACTCTGATCACGCGTACGACCAATGACGTCCAGCAGGTGCAGATGCTGGCGCTGATGACCTTCA
CGCTGCTCGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGCTGGCGCTGGGCCTGGATGTGCCGCTGTCAGGGGTG
CTGGTCGCCGTGGTGCCGGTGCTGGGCATCTGTGTGACGTTGATCGTGCGGCGGCTGCGGCCGCTGTTCCGGACGATGCA
GGAGCGGCTGGACACCGTGAACCGGGTGCTGCGGGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTCCGCGACG
AGTACGAGCAGCAGCGCTTCCGGCACGCCAACGCCGAGCTCACCGAGATGTCCCTGGCCACCGGCAAGCTGCTGGCGCTG
ATGTTCCCGATGGTGATGACGGTGGTGAACCTGTCGTCGATCGCAGTGGTGTGGTTCGGCGCGCATCGCATCGACAGCGG
TGGGATGGAGATCGGCGATCTGACGGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGGATCCAGGAGGTGCTGGACACCTCCTCCAGTGTGGTTCCG
CCGACCGCGCCCGTGGTCAAGCTGCTCAGGCACGGGCATCTGGAGATGCGCGGGGCCGGGTTCCGCTACCCGGGTGCCGA
GGAGCCGGTGCTGAAGGCCGTCGACCTGGTGGCCCGGCCCGGTGAGACGACCGCCGTGATCGGCTCGACCGGCAGCGGCA
AGTCCACGCTGCTGGGACTGGTGCCGCGGCTGTTCGACGCGACCGACGGGGAGGTGCTCGTCGACGGCGTCGCGGTGGCC
TCCCTCGAACCGAAGCTGCTGGCGAAGACGGTCGGGCTCGTCCCGCAGAAGCCGTATCTCTTCGCGGGAACGGTGGCGAC
CAATCTGCGGTACGGCAATCCGGACGCGACGGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGAGTTCG
TGGAGCGGCTCGAAGGCGGGCTCGACTCGCCGATCGCGCAGGGCGGCACGAACGTCTCCGGTGGTCAGCGGCAGCGGCTC
GCGATCGCCCGCACGCTGGTCCAGCGGCCGGAGATCTATCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCGACCGA
CGCGGCGTTGCGTGCCGCGCTCGCCCGGGAGACCGCCGAGGCGACCGTCGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCGGACCGGATCGTCGTACTCGATGAAGGGCGGGTGGTCGGGACGGGCCGGCACCACGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.884

94.107

0.385